Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L10
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...   107   2e-24
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.7  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.2  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   6.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.0  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score =  107 bits (256), Expect = 2e-24
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
 Frame = +3

Query: 372 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 551
           HP  +FF L+FR  AI+ YIL  +F+ SF+  F+++  LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106

Query: 552 WNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVW 671
            N    +G+S W+FE+      RN  + + FW  L L P +W
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIW 148


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 366 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 545
           FV+P +  F L   CS ++ ++L G F   F+A   + I  L    +   N S R     
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411

Query: 546 RWW 554
           +WW
Sbjct: 412 KWW 414


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +3

Query: 378 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 524
           Y+  F LV   +A++V    G     W S   I   V  +L+L A +W  KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 423 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 590
           V+I+ G+    F A   L  LL   +F+      G  L    W +++ +NGK++W+
Sbjct: 30  VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 366 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 482
           F+HP+      +FRC  +  + L  + S SF  SF+  +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 497 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 378
           CR++    Y  C++  G P  Q   NY     H  ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,575
Number of Sequences: 5004
Number of extensions: 57842
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)