Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_L10
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 111 8e-25
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 109 3e-24
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 30 1.8
11_06_0008 - 19181933-19182009,19185148-19185691 29 5.4
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 5.4
01_06_0409 + 29142409-29142870 29 5.4
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27... 28 7.1
01_01_0522 - 3834551-3835451,3835992-3836572 28 7.1
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 111 bits (266), Expect = 8e-25
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Frame = +3
Query: 360 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 539
+ + +P FFH++F+ A+ YIL F +F+ FV+ +LL + DFW VKN+SGR+LV
Sbjct: 38 ENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNVSGRILV 97
Query: 540 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVW 671
GLRWWN +DD G S W FE +R+N+ +S LFW L L W
Sbjct: 98 GLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAW 145
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 109 bits (261), Expect = 3e-24
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Frame = +3
Query: 360 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 539
+ + +P FH++F+ A++ YIL F SF+ FV+ + L + DFW VKN+SGR+LV
Sbjct: 44 ENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNVSGRILV 103
Query: 540 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVW 671
G+RWWN +DD G S W FE +R+N+ +S LFW L L W
Sbjct: 104 GMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAW 151
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 538 TSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEH 407
TSN L+ +V++ D+ R L NES + +Y++I +H
Sbjct: 712 TSNSTLVAKSVERLVDAIRPNLCHLVRNESNSSSEFVYSVIGKH 755
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 671 PDQGAQRQAHPEQAALVPVDPALTGLEHPV 582
P+ G R +HP+ L+PV L GL PV
Sbjct: 113 PETGGHRVSHPQAPPLLPVLLELGGLRAPV 142
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 563 GRQRQVALGVRGPSEPGQQEREPPVLDG 646
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>01_06_0409 + 29142409-29142870
Length = 153
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 678 KWTRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSST 550
+W+RP A G R R C GS G R P+AT H +T
Sbjct: 45 RWSRPDLDAGGSGRR--RRQCGDGSGGGRGPAATWWLPCHLAT 85
>05_01_0040 -
273384-273437,273920-274102,274465-274677,275479-276294,
276431-276823,277233-277238
Length = 554
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 348 PLHQMRWCHHQAAGPLPN 295
PLH +WCH A PL N
Sbjct: 221 PLHSGQWCHDAEARPLSN 238
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 672 TRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSS 553
T P S S G S S S G TP+++CR +PH +
Sbjct: 18 TAPDSRRSWISDIGSSSSVSARSFGGDTPASSCRYKPHKA 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,337
Number of Sequences: 37544
Number of extensions: 395441
Number of successful extensions: 969
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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