Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L09
         (713 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    83   6e-18
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   1.8  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   7.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.5  
AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant r...    23   9.5  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 83.4 bits (197), Expect = 6e-18
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
 Frame = +2

Query: 95  MADQLXESQLAEFKXAFSLFDKXGXGTITXKELGTVMRSLGQNPTEAELQDMINEVDADG 274
           MA+ L + ++ + +  FS++D  G G +   +LG  +R+L  NPT  EL   +      G
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRG 59

Query: 275 NGTIDFPEFLTMMA--RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 448
              I F EFL + +  +K K+    E+  E  +++DK+ +G +  AEL H +T LGE+L 
Sbjct: 60  EKKIKFEEFLPIFSQVKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLD 119

Query: 449 DEEVDEMIREA--DIDGDGQVNYEEFVTMM 532
           D E+D ++++     D DG + Y  F+  M
Sbjct: 120 DVELDNVMKDCMDPEDDDGNIPYAPFLKKM 149



 Score = 34.3 bits (75), Expect = 0.004
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 80  PSXSXMADQLXESQLAEFKXAFSLFDKXGXGTITXKELGTVMRSLGQNPTEAELQDMINE 259
           P  S +  +  +    +F     L+DK   GT+   EL   + +LG+   + EL +++ +
Sbjct: 70  PIFSQVKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKD 129

Query: 260 V--DADGNGTIDFPEFLTMMARKM 325
                D +G I +  FL  M   M
Sbjct: 130 CMDPEDDDGNIPYAPFLKKMMDNM 153


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 106 LIRHXRXTWXRWSDTKKAQTTPQKRPHGPTA 14
           +IR+   TW RW   K+      +R H P A
Sbjct: 782 IIRYGVATWGRWVLDKETHRKSVQRAHRPGA 812


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 374  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 502
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 561  CVKSREFKYTFCFMTHNISIVLDLHFSS 644
            C +     Y F   T NIS + + H+SS
Sbjct: 3093 CYEQHGLSYVFPHNTSNISGITEDHYSS 3120


>AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant
           receptor Or1 protein.
          Length = 417

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 313 HHCQELGKVYRAVSVRVYFIDHVLKFG 233
           HH +  G +Y  V+  V F   +L FG
Sbjct: 253 HHSKVYGTMYAKVTECVLFHKDILSFG 279


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,363
Number of Sequences: 2352
Number of extensions: 10035
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)