Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L08
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 29   3.1  
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)                   29   5.5  
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)                   29   5.5  
SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_3507| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_25027| Best HMM Match : EGF_2 (HMM E-Value=5.8)                     28   7.3  
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)            28   9.6  

>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/109 (22%), Positives = 49/109 (44%)
 Frame = +2

Query: 227 STTGKLFKDLGILEHSQQAWQKTLSTSARGYLWLETNAPVYYAQTVEICHPYTQLSKDAF 406
           S T +  ++ GI + + +A+        +G  W++ N P YY++  E   P  Q + D  
Sbjct: 218 SKTARFAQEYGIEQGTIKAYGHVKHAFDKGNSWVQENYPTYYSKFREYADPAGQYAMDKL 277

Query: 407 FIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWS 553
            +A +         + Y+ +K P   + +E     L++ +QS    A++
Sbjct: 278 TLAGQFIEEQSRPARAYLNKKVP---ELLERTIGQLINEIQSRGHKAYT 323


>SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
 Frame = +2

Query: 296 LSTSARGYLWLETNAPVYYAQTVEICHPYTQLSKD---------AFFIALKKAGILYGNV 448
           L+ S RG  W+++  P    QT+ + + Y QL+ +          FFIA+   G++  ++
Sbjct: 309 LNISQRGSAWVKSLIPTAQIQTLMLLYLYNQLTPEMLWFIIPLIVFFIAV--TGLVVFSM 366

Query: 449 QDYVVEKTPVVIKTIEEYA---PGLVDNVQSYASTAWSGLKKYSSDYYQITTDYLVTKVF 619
           Q +   +    +K++ E       ++D   +     W  ++ Y S +  +     V  + 
Sbjct: 367 QMFYGREALKQLKSVSELMKKFDPMIDEKAAETKFMWKSIRPYISFFICLLITVAVFPLC 426

Query: 620 VGDWAP 637
              W P
Sbjct: 427 DKSWIP 432


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +2

Query: 389 LSKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEY-APGLVDNVQSYASTAWSGLKK 565
           L+ D F  A +       +V D+ +E  P  +  I E+  P    +++S     W GL  
Sbjct: 355 LNPDKFQFAGRSVDFAGFHVSDHTIEPLPKYLDAIREFPTPTSTTDIRS-----WFGLVN 409

Query: 566 YSSDYYQITTDYLVTKVFVGDWAPXVLXNKTQSALNMTKSQV 691
             S+Y Q+       K F+      +  ++ + A   +K Q+
Sbjct: 410 QVSNYAQLRDLIAPFKPFLSPRHKFLWSSELEEAFQASKEQI 451


>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
          Length = 913

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = +2

Query: 389 LSKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEY-APGLVDNVQSYASTAWSGLKK 565
           L+ D F  A +       +V D+ +E  P  +  I E+  P     ++S     W GL  
Sbjct: 132 LNPDKFQFAGRSVDFSGFHVSDHTIEPLPKYLDAIREFPTPTSTTGIRS-----WFGLVN 186

Query: 566 YSSDYYQITTDYLVTKVFVGDWAPXVLXNKTQSALNMTKSQV 691
             S+Y Q+       K F+      +  ++ + A   +K Q+
Sbjct: 187 QVSNYAQLRDLMAPFKPFLSPRHKFLWSSELEGAFQASKEQI 228


>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
          Length = 1067

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = +2

Query: 389  LSKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEY-APGLVDNVQSYASTAWSGLKK 565
            L+ D F  A +       +V D+ +E  P  +  I E+  P     ++S     W GL  
Sbjct: 713  LNPDKFQFAGRSVDFSGFHVSDHTIEPLPKYLDAIREFPTPTSTTGIRS-----WFGLVN 767

Query: 566  YSSDYYQITTDYLVTKVFVGDWAPXVLXNKTQSALNMTKSQV 691
              S+Y Q+       K F+      +  ++ + A   +K Q+
Sbjct: 768  QVSNYAQLRDLMAPFKPFLSPRHKFLWSSELEGAFQASKEQI 809


>SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 491 IEEYAPGLVDNVQSYASTAWSG-LKKYSSDYYQITTDYLVTKVFVGDWAPXVLXNKTQSA 667
           I + A  + DN  SY     S    +YS  YY+++ +Y  T   + D A  +      +A
Sbjct: 42  ITDKATSITDNRYSYVYYRQSHEYYRYSYVYYRLSHEYYRTATCISDKATSINDIMCMTA 101

Query: 668 LNMTK-SQVSSYY 703
             MT+ + +S  Y
Sbjct: 102 ATMTRTAHISQSY 114


>SB_3507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 152 SFVLLVSIAGLVAYDVSRAGGNFPKSTTGKLFKDLGILEHSQQAWQKTLSTSARGYLWLE 331
           +FV  + +A    Y   +A    P+ST  ++FKDLG + H    + + L    + +  L+
Sbjct: 39  TFVEALRLAYEDCYGSVKAAEVVPESTLNEIFKDLGNIYHLDVKFLQELEERMKTWYTLK 98

Query: 332 TNAPVYY 352
                YY
Sbjct: 99  RLYANYY 105


>SB_25027| Best HMM Match : EGF_2 (HMM E-Value=5.8)
          Length = 205

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +2

Query: 389 LSKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEY-APGLVDNVQSYASTAWSGLKK 565
           L+ D F  A +       +V D+ +E  P  +  I ++  P    +++S     W GL  
Sbjct: 5   LNPDKFQFAGRSVDFAGFHVSDHTIEPLPKYLDAIRKFPTPTSTTDIRS-----WFGLVN 59

Query: 566 YSSDYYQITTDYLVTKVFVGDWAPXVLXNKTQSALNMTKSQV 691
             S+Y Q+       K F+      +  ++ + A   +K Q+
Sbjct: 60  QVSNYAQLRDLMAPFKPFLSPHHKFLWSSELEEAFQASKEQI 101


>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 1347

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 233 TGKLFKDLGILEHSQQAWQKTLSTSARGYLWLETNAPVYYAQT 361
           TGKLF  LG +EH  Q    TL  S R    ++T   +YY ++
Sbjct: 753 TGKLFSKLGSVEHRAQVILYTLLLSDRYRHGIDTGL-LYYMKS 794


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,145,138
Number of Sequences: 59808
Number of extensions: 511253
Number of successful extensions: 1259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)