Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L08
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.78 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 198 CLGLEETSLRVQRESCSKIWAFLS-IVNRLGRRHCPPLLAV 317
           C G+  ++ +++ + C ++W   S ++N + R  CPP L V
Sbjct: 116 CSGIT-SAYKIEIDMCDRLWVLDSGLINNV-RSVCPPQLLV 154


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 655  NAVSSEYDKVPSFIILCMVPATGSHI 732
            N VS+      +F++L +VPAT  H+
Sbjct: 1507 NQVSNNVKPGGNFVVLDLVPATWYHL 1532


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 537 HLRPGADSKSTLAIIIKSQLTIWLLKFLLVI 629
           HL     + +TL II+ + +  WL  F+L +
Sbjct: 363 HLAKERKASTTLGIIMSAFIVCWLPFFVLAL 393


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 733 VYVNLLPEPYI 701
           +Y N  PEPYI
Sbjct: 209 IYYNCCPEPYI 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,326
Number of Sequences: 438
Number of extensions: 4934
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)