Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_L05
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 133 2e-32
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 36 0.004
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 33 0.049
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.2
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 3.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.2
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 26 5.6
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 25 7.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.7
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 9.7
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 133 bits (321), Expect = 2e-32
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Frame = +1
Query: 199 EYEKAQQRSLNDPEGFWGEVGSEL-EWTKPWDRVLDDS-NAPFTKWWVGGEMSVCYNAVD 372
EY++ + S+NDP FWG + ++ W K + V+ S + + W+ G +S CYN VD
Sbjct: 34 EYKRMYEESINDPSTFWGNMARDMMTWDKQFSTVVQGSIDKADSAWFADGAISPCYNLVD 93
Query: 373 RHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLV 552
RH + R + AL++++ + R I+Y EL VS+ AG L ++GV G RV IYMP++
Sbjct: 94 RHAI-ARPDAVALIYEADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMI 152
Query: 553 PEAIIAMLATNRIGAIHSVVFGGFAARELXTRI 651
PE IIAMLA R+GAIHSV+F GF+A + R+
Sbjct: 153 PETIIAMLAIVRLGAIHSVIFAGFSAESVADRV 185
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +1
Query: 400 QFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLVPEAIIAMLA 579
+FAL + +R ++Y+EL ++ ++LA L + G G+ + +Y EA I+MLA
Sbjct: 2737 EFALDINQDSVQLIR-LTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCIEAFISMLA 2795
Query: 580 TNRIG 594
+ G
Sbjct: 2796 ILKAG 2800
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 32.7 bits (71), Expect = 0.049
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 448 ISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 546
+S+N++ D+ R AG L LG++KG + +Y P
Sbjct: 97 LSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 335 THHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGS 231
+HH V L S +R H +H+ S P S + S
Sbjct: 307 SHHNVRTTLFSDDSRFHSKIHTHSTPPSQMYSAAS 341
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 445 KISYNELKDQVSRLAGKLTTLGVSKGARV 531
K SYN LK Q S L GK++ + + G R+
Sbjct: 69 KNSYNSLKQQHSNLLGKVSGIKSTLGERL 97
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 347 ISPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCW 213
I+ P+HH VN S +H++S SPQ+ SF+ W
Sbjct: 8 INKPSHHNVN-----YNGNSFNSIHATSFGMSPQSWGNSFSGQAW 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 344 SPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFND 222
S P N + S+ T S HS P SP +PS ++ D
Sbjct: 280 SQPPRPPTNASTRSTGTSS-SMAHSYDSPPSPSSPSDAYGD 319
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.2
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Frame = -1
Query: 662 SACSILVXNSLAAKPPNTTE*MAPIRLVASIAIIASGTSGM*ISTRAPLLTPNVVSFPAR 483
++ S+ +SLA+ N+T +P + + S + +T + L + ++ S
Sbjct: 81 ASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLA 140
Query: 482 RET*SFSSL*EIFLTVSVSGES*TKANCSPLPLTTCRSTAL*HTDIS-PPTHHFVNGALL 306
+ + SSL T S S T + S P ++ S++L T S T + + L
Sbjct: 141 SSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSL 200
Query: 305 SSRTRSHGFVHSSSDPTSPQNPSGS 231
+S T S SS T+ N + S
Sbjct: 201 NS-TTSATATSSSLSSTAASNSATS 224
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 155 ETKXXFLSSLIDDSNLLCS 99
E K SSL+DDS LLCS
Sbjct: 116 ENKQYSESSLLDDSQLLCS 134
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 615 KYNRVNGADTIGSEHSYNS 559
+Y+ NG T G+ HSY S
Sbjct: 303 RYSHANGVTTSGTTHSYTS 321
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -1
Query: 287 HGFVHSSSDPTSPQNPSGSFNDLCWAFSYSGVVPHTL*HSMSAAETKXXFLSSLID 120
HG HS+ D N SF L + Y +P+ H SSLI+
Sbjct: 842 HGSTHSAEDNEKMSNFLRSFLSLFFDVPYDSFIPYLPTHFNEEESDIDSLSSSLIE 897
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 342 RDVGMLQRGGPTRGQWKRRAVRFGSRLA 425
R++G + G P Q K+RA++FGS+ A
Sbjct: 503 RELGR-RLGCPLASQEKKRAIQFGSKAA 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,435
Number of Sequences: 5004
Number of extensions: 59132
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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