Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L04
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    24   5.8  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    24   5.8  
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    23   7.7  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 237 YFENVFFY*HLHFYSA 190
           YFE++ +Y  +HFY A
Sbjct: 414 YFESIMWYTAIHFYLA 429


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 78  RDVKSSNDTLATEMR-XP*NK 19
           RDVKSSN T   E R  P NK
Sbjct: 70  RDVKSSNGTFVNETRLSPENK 90


>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 123 ELQCTTDKPR--TWRAERDVKSSNDTLATE 40
           EL   T +P+  TW  ERD+K    +L T+
Sbjct: 90  ELDLVTLRPKKPTWDLERDLKERMRSLETQ 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,690
Number of Sequences: 5004
Number of extensions: 11836
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)