Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L04
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0536 - 6965343-6965537,6966407-6966595                           28   1.3  
03_01_0437 + 3390099-3392570                                           27   3.8  
01_05_0271 + 20276965-20278674                                         26   6.7  

>04_01_0536 - 6965343-6965537,6966407-6966595
          Length = 127

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 102 KPRTWRAERDVKSSNDTLATEMRXP 28
           +P ++ +E  +KSS+DT+ATE   P
Sbjct: 2   EPTSYPSELKIKSSSDTIATEAHLP 26


>03_01_0437 + 3390099-3392570
          Length = 823

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 102 CLSYTVVQHCFAFNNSLH 155
           C+ Y+VV  CFA N +LH
Sbjct: 529 CVPYSVVISCFAKNGNLH 546


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 78  ALLSMCA--VCLSYTVVQHCFAFNNSLH 155
           +LLS CA  V +SY+   HC+AF    H
Sbjct: 326 SLLSACASMVNISYSKEIHCYAFRVGAH 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,852,745
Number of Sequences: 37544
Number of extensions: 67828
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)