Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L04
         (306 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    27   4.0  
SB_26727| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_42673| Best HMM Match : CARDB (HMM E-Value=5.6e-08)                 25   9.2  

>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 149  RIIERETMLNYSVRQTNRAHGEQSVTXRAATT 54
            R ++RE   +YS+R T   HG+ S +  AA T
Sbjct: 1378 RPLDREDQASYSLRVTAMDHGKPSQSAVAAIT 1409


>SB_26727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 172 YYKMNRCKELLNAKQC*TTVYDRQTAHME 86
           YY+    K LLNA  C T VY++  + +E
Sbjct: 22  YYRRRYRKYLLNAIACRTCVYEKLESKVE 50


>SB_42673| Best HMM Match : CARDB (HMM E-Value=5.6e-08)
          Length = 1433

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 136 RSIILYTDSFYSITQLARS 192
           R I++YTDS+ S+T+  R+
Sbjct: 168 RYILIYTDSYQSVTEAKRN 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,992,643
Number of Sequences: 59808
Number of extensions: 93287
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)