Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L04
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   0.85 
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    29   0.85 
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    26   6.0  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    26   6.0  
AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 13  FVLVSRASHLGRQCVVAALXVTLCSPCARFVCRTL*FNIVSRSIILYTDSFYSITQLARS 192
           F L + A++L RQ V AAL V++ +      CR L +  +S  + +   S  +  + A++
Sbjct: 314 FALSATAAYLNRQDVQAALHVSVNASTNFQTCRNLTYGELSTDLQIRISSILTSEKYAQN 373

Query: 193 AVKM 204
            +K+
Sbjct: 374 NMKI 377


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 13  FVLVSRASHLGRQCVVAALXVTLCSPCARFVCRTL*FNIVSRSIILYTDSFYSITQLARS 192
           F L + A++L RQ V AAL V++ +      CR L +  +S  + +   S  +  + A++
Sbjct: 314 FALSATAAYLNRQDVQAALHVSVNASTNFQTCRNLTYGELSTDLQIRISSILTSEKYAQN 373

Query: 193 AVKM 204
            +K+
Sbjct: 374 NMKI 377


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 13  FVLVSRASHLGRQCVVAALXVTLCSPCARFVCRTL*FNIVSRSIILYTDSFYSITQLARS 192
           F L + A++L RQ V AAL V++ +      CR L +  +S  + +   S  +  + A++
Sbjct: 314 FALSATAAYLNRQDVQAALHVSVNASTNFQTCRNLTYGELSTDLQIRISSILTSEKYAQN 373

Query: 193 AVKM 204
            +K+
Sbjct: 374 NMKI 377


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 5   AINLCLFQGXLISVANVSLLLXTSRSALHVRGL 103
           A  +CLF   ++ +    LL+  +   LH+R L
Sbjct: 159 AFTICLFYDLMLGIVVAGLLMELNSIFLHIRSL 191


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 5   AINLCLFQGXLISVANVSLLLXTSRSALHVRGL 103
           A  +CLF   ++ +    LL+  +   LH+R L
Sbjct: 159 AFTICLFYDLMLGIVVAGLLMELNSIFLHIRSL 191


>AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.2 protein.
          Length = 619

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 55  VVAALXVTLCSPCARFVCRTL*FNIVSRSIILYTDSFYSITQLARS 192
           V + + +T CSPC  F C+    +  +R   +Y        QLA S
Sbjct: 460 VDSEIMITECSPCPAFTCKNYSVSGDTRLFQVYLKPNCDHEQLAES 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,462,027
Number of Sequences: 27780
Number of extensions: 69156
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)