Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L03
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    64   4e-11
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    61   5e-10
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 35/89 (39%), Positives = 44/89 (49%)
 Frame = +1

Query: 121 TGAQISTILXXXXXXXXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXX 300
           TG +I+T+L        PYWPGLFAKALEG++V++LIT++ SG                 
Sbjct: 24  TGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPAA 82

Query: 301 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 387
                             SDDDMGFGLFD
Sbjct: 83  GGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 34/89 (38%), Positives = 43/89 (48%)
 Frame = +1

Query: 121 TGAQISTILXXXXXXXXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXX 300
           TG +I+T+L        P WPGLFAKALEG++V++LIT++ SG                 
Sbjct: 24  TGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPAA 82

Query: 301 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 387
                             SDDDMGFGLFD
Sbjct: 83  GGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 355 SDDDMGFGLFD 387
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 355 SDDDMGFGLFD 387
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 355 SDDDMGFGLFD 387
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 78  CFLCSHPGGCCCCRXWC 128
           C  C    GCCCCR  C
Sbjct: 77  CGCCGCGCGCCCCRPRC 93



 Score = 27.1 bits (57), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 88  CCRPRCCCCCRRCC 101


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 237 VGDQVTDIDAFQGFGEQTWPIWRY 166
           V + ++D+  F    EQ WP WR+
Sbjct: 412 VHEILSDVLLFHSLNEQVWPHWRF 435


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 86  CCRPRCCCCCRRCC 99


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 87  CCRPKCCCCCRRCC 100


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 87  CCRPRCCCCCRRCC 100


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 88  CCRPRCCCCCRRCC 101


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 68  CCRPRCCCCCRPKC 81


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 70  CCRPRCCCCCRPKC 83


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  CSHPGGCCCCRXWC 128
           C  P  CCCCR  C
Sbjct: 73  CCRPRCCCCCRPKC 86


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 18  GLRXLARSNLKIGVKSCIRMCFLCSHPGGCCCCRXWCANFHHLXSGGCSCSAILARSVRQ 197
           GLR L      +   +C   C  C+  G   C R   +      +GGC+C+  LA +   
Sbjct: 42  GLRNLVNDET-LKTDACTA-CSQCTENGYSVCLRPKDSRASRT-AGGCTCAHTLAANCHT 98

Query: 198 SLGRHQCP 221
            L + Q P
Sbjct: 99  DLAQTQHP 106


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
           protein T22B11.4a protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 18  GLRXLARSNLKIGVKSCIRMCFLCSHPGGCCCCRXWCANFHHLXSGGCSCSAILARSVRQ 197
           GLR L      +   +C   C  C+  G   C R   +      +GGC+C+  LA +   
Sbjct: 42  GLRNLVNDET-LKTDACTA-CSQCTENGYSVCLRPKDSRASRT-AGGCTCAHTLAANCHT 98

Query: 198 SLGRHQCP 221
            L + Q P
Sbjct: 99  DLAQTQHP 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,945,653
Number of Sequences: 27780
Number of extensions: 121964
Number of successful extensions: 373
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)