Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L03
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -2

Query: 461 SQFLIT*KLYNRQNGIF-----LFLHKAS*SKRPKPM 366
           S+ +++ +LY+RQNG+      L L K   + +P PM
Sbjct: 275 SKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPM 311


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/38 (23%), Positives = 14/38 (36%)
 Frame = +3

Query: 105 CCCCRXWCANFHHLXSGGCSCSAILARSVRQSLGRHQC 218
           C  C    + FH+       C     RS++Q +    C
Sbjct: 67  CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPC 104



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 404 LHKAS*SKRPKP 369
           LH+AS SK P+P
Sbjct: 554 LHRASLSKTPQP 565


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 78  CFLCSHPGGCCCCRXWCANF 137
           C L   P    CCR W + F
Sbjct: 389 CELHMQPRKKNCCRSWLSKF 408


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 78  CFLCSHPGGCCCCRXWCANF 137
           C L   P    CCR W + F
Sbjct: 389 CELHMQPRKKNCCRSWLSKF 408


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -1

Query: 222  TDIDAFQGFGEQTWPIWRYSYSRRXQDGGNLRTSXGNSSSHQD 94
            T+  A    G Q+ P     YSR    GG   T    S  + D
Sbjct: 1767 TNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHNVFSPEYDD 1809


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,062
Number of Sequences: 438
Number of extensions: 1519
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)