Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L02
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54044| Best HMM Match : PARP (HMM E-Value=0.078)                    30   2.2  
SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)                       29   2.9  
SB_48851| Best HMM Match : zf-C2H2 (HMM E-Value=3.2e-13)               29   2.9  
SB_4494| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-09)                29   2.9  
SB_21900| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   8.8  
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_54044| Best HMM Match : PARP (HMM E-Value=0.078)
          Length = 489

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 491 SSSMQSNVPSPFTGNHTHLNMPGSQWGQGHKYLSDHLHS 607
           +S   SN  +P +   T+ N P +Q+G  H + ++HLHS
Sbjct: 89  ASCTSSNTLTPPSNRQTNEN-PSTQFGAYHAFYNNHLHS 126


>SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)
          Length = 542

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/97 (23%), Positives = 48/97 (49%)
 Frame = +2

Query: 233 GSSYIKQNVHVSPLLKSQSVALKLPTNVVDINASEVGRFSPNRERDISGPVINSHYKKQH 412
           GS     ++H++    S S+ +++ T V+D N +   R    ++ ++SGPV   H + + 
Sbjct: 214 GSPTFGLSIHLAIPECSTSLRVRITTPVIDFNGTRFDR--QRQDVEVSGPVAR-HLRARR 270

Query: 413 DMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSP 523
             SK+   +  +P +N       + ++++M    PSP
Sbjct: 271 SSSKLIYVL--EPLLN--GSAITLDVNNTMTITNPSP 303


>SB_48851| Best HMM Match : zf-C2H2 (HMM E-Value=3.2e-13)
          Length = 169

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 QRSKSFHRKPYSSQHARLTMGTRPQILIRS 597
           +R KSF+R  Y  QH ++  G +P    RS
Sbjct: 115 ERGKSFYRSDYLKQHVKIHTGKKPHHCDRS 144


>SB_4494| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-09)
          Length = 164

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 QRSKSFHRKPYSSQHARLTMGTRPQILIRS 597
           +R KSF+R  Y  QH ++  G +P    RS
Sbjct: 80  ERGKSFYRSDYLKQHVKIHTGKKPHHCDRS 109


>SB_21900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 25.8 bits (54), Expect(2) = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 518 SPFTGNHTHLNMPGSQWGQGHKYLSD-HLHSAHYLSLR 628
           SP   +H    +  S+W  GH Y S+ HL  +H  ++R
Sbjct: 27  SPCLDSHYEAYILQSRWTVGHLYASNLHLGQSHVKNVR 64



 Score = 20.6 bits (41), Expect(2) = 8.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 359 RERDISGPVINSHYK 403
           +ER +  P ++SHY+
Sbjct: 21  KERKLRSPCLDSHYE 35


>SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 933

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 407 QHDMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSPFTGNHTHLNMPGSQWGQGHKY 586
           QH +S    T       N Y   G V  S     +  + +   H+ L   G + GQ + Y
Sbjct: 19  QHSLSLFQKTGDESNQANAYLSMGNVHRSHGKFEDAMNTYQHAHSLLQKTGDESGQANAY 78

Query: 587 LS-DHLHSA 610
           LS  ++HS+
Sbjct: 79  LSMGNVHSS 87


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 350 SPNRERDISGPVINSHYKKQHDMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSPF 526
           S N++ + +  +++S      D S ID + +  P       RG++  +S M  ++PS F
Sbjct: 49  SSNQDGENNSRLVSSEADDDIDASHIDASPRPPPLKRSNAFRGSLPTTSEMPKDLPSTF 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,464,053
Number of Sequences: 59808
Number of extensions: 493436
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)