Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K20
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.60 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   3.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   5.6  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   5.6  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   9.8  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 237 MDLDLIQKRETYKYRCNYILNEKLNEVQK 323
           +++DL +K++ Y+Y CN  LN  + + +K
Sbjct: 146 LEIDLSEKKDAYEYSCNK-LNSYMRQTKK 173


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 202 INNLRPYLQLINNIDTKKK 146
           + N+R YL+  NNID+K +
Sbjct: 118 LRNVRTYLEAANNIDSKSE 136


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 354  SIFYYLKQDNVFEPHSIFRLKYNCTYIYTS 265
            S F Y      +EP ++    Y  T +YTS
Sbjct: 1442 SAFTYTTSSTQYEPSTVVTTSYYTTSVYTS 1471


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 108 EYCHYKVLKYDNFFFXVSIL 167
           E CH K   Y +F + VS+L
Sbjct: 890 EVCHQKFADYSDFTYGVSVL 909


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 300  EKLNEVQKHYLVL 338
            EK+N++Q+HY VL
Sbjct: 1109 EKVNQIQEHYQVL 1121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,753
Number of Sequences: 5004
Number of extensions: 24441
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)