Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_K20
(395 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protei... 29 5.6
AL391994-6|CAI13751.1| 1226|Homo sapiens AT rich interactive dom... 29 5.6
AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive dom... 29 5.6
AL133594-1|CAB63731.1| 166|Homo sapiens hypothetical protein pr... 29 5.6
AL133418-6|CAI22962.1| 1226|Homo sapiens AT rich interactive dom... 29 5.6
AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive dom... 29 5.6
AK023144-1|BAB14428.1| 459|Homo sapiens protein ( Homo sapiens ... 29 5.6
AF227899-1|AAF36964.1| 873|Homo sapiens breast carcinoma-associ... 29 5.6
AF214114-1|AAF28341.2| 1226|Homo sapiens retinoblastoma-binding ... 29 5.6
AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein ... 29 5.6
AF208045-1|AAF23433.3| 1213|Homo sapiens breast cancer-associate... 28 9.7
AF083249-1|AAD41239.1| 748|Homo sapiens Rb binding protein homo... 28 9.7
>AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protein 180
protein.
Length = 1312
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1235 ILQEKLQEIRKHYLSLKSEV 1254
>AL391994-6|CAI13751.1| 1226|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1226
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1149 ILQEKLQEIRKHYLSLKSEV 1168
>AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1233 ILQEKLQEIRKHYLSLKSEV 1252
>AL133594-1|CAB63731.1| 166|Homo sapiens hypothetical protein
protein.
Length = 166
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 89 ILQEKLQEIRKHYLSLKSEV 108
>AL133418-6|CAI22962.1| 1226|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1226
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1149 ILQEKLQEIRKHYLSLKSEV 1168
>AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1233 ILQEKLQEIRKHYLSLKSEV 1252
>AK023144-1|BAB14428.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ13082 fis, clone NT2RP3002056, weakly similar to
RETINOBLASTOMA BINDING PROTEIN 1. ).
Length = 459
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 382 ILQEKLQEIRKHYLSLKSEV 401
>AF227899-1|AAF36964.1| 873|Homo sapiens breast
carcinoma-associated antigen isoform I protein.
Length = 873
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 796 ILQEKLQEIRKHYLSLKSEV 815
>AF214114-1|AAF28341.2| 1226|Homo sapiens retinoblastoma-binding
protein 1-like 1 protein.
Length = 1226
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1149 ILQEKLQEIRKHYLSLKSEV 1168
>AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein
protein.
Length = 1325
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E++KHYL L +++
Sbjct: 1248 ILQEKLQEIRKHYLSLKSEV 1267
>AF208045-1|AAF23433.3| 1213|Homo sapiens breast cancer-associated
antigen BRCAA1 protein.
Length = 1213
Score = 28.3 bits (60), Expect = 9.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E QKHYL L +++
Sbjct: 1153 ILQEKLQENQKHYLSLKSEV 1172
>AF083249-1|AAD41239.1| 748|Homo sapiens Rb binding protein homolog
protein.
Length = 748
Score = 28.3 bits (60), Expect = 9.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 291 ILNEKLNEVQKHYLVLNNKI 350
IL EKL E QKHYL L +++
Sbjct: 688 ILQEKLQENQKHYLSLKSEV 707
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,496,902
Number of Sequences: 237096
Number of extensions: 684669
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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