Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K20
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical
           protein C37A2.8a protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 231 KRMDLDLIQKRETYKYRCNYILNEKLNEVQ-KHYLVL 338
           K+ D+D  +K+ET K+R + +  EKLN+++ KH L L
Sbjct: 228 KKTDMDKAKKKETEKHR-DILRREKLNKLRAKHGLEL 263


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 HLEYCHYKVLKYDNFFFXVSILFI 173
           ++ + HY  L YDN FF +++ FI
Sbjct: 429 NIGHVHYMPLIYDNCFFLLTVRFI 452


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 HLEYCHYKVLKYDNFFFXVSILFI 173
           ++ + HY  L YDN FF +++ FI
Sbjct: 565 NIGHVHYMPLIYDNCFFLLTVRFI 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,296,054
Number of Sequences: 27780
Number of extensions: 126021
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)