Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K17
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              33   0.003
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 410 CERVYAPVCASDGQTYVNECRMN 478
           C R + PVCAS+G+ Y N C ++
Sbjct: 110 CPRRHRPVCASNGKIYANHCELH 132



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 229 ITLPILLFTLSIHKEHLIVSSSSSRNMC 312
           +T+P  +   SIH+E  +  SS S + C
Sbjct: 55  MTIPPSIDRSSIHEESYLAESSRSIDPC 82


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 272 NILLFHHHHQETCVYVSLHIFAL-LHLSTQW 361
           NILL  H+   +  YV+L I  + + L T W
Sbjct: 236 NILLRRHYSMNSTTYVTLTIVLMTMTLMTLW 266


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 452 TYVNECRMNCKNSLRDPKERVFVKR 526
           TY+NEC +N + S R     +F ++
Sbjct: 482 TYMNECLLNIQKSPRTLTLGIFAEK 506


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 311 VYVSLHIFALLHLSTQWKTTDDLPILGE 394
           + +SLH+F LL +     T+  +P+LG+
Sbjct: 282 ILISLHVFFLLVVEIIPPTSLVVPLLGK 309


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 311 VYVSLHIFALLHLSTQWKTTDDLPILGE 394
           + +SLH+F LL +     T+  +P+LG+
Sbjct: 282 ILISLHVFFLLVVEIIPPTSLVVPLLGK 309


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 280 IVSSSSSRNMCICISTYLRTAASEHAMEDNGRPTD 384
           IV +  S    IC++T  +  + EH     G   D
Sbjct: 282 IVQTKGSDAELICVTTGTKCVSGEHLSVSGGALND 316


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 143 DDTENGNTSEMSNKNIFFLKRFPD 214
           ++T++ +  E  N+NI   K FP+
Sbjct: 83  EETDDKDDDESDNENIKSQKEFPN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,172
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)