Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K16
         (809 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    45   0.002
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    44   0.003
UniRef50_Q4SDF0 Cluster: Chromosome 3 SCAF14639, whole genome sh...    36   1.2  
UniRef50_Q4RMA1 Cluster: Chromosome 10 SCAF15019, whole genome s...    36   1.6  
UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1; Bu...    35   2.8  
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   6.4  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 20/25 (80%), Positives = 20/25 (80%)
 Frame = +1

Query: 469 MGDGNHSPSGGPYARLPTRAIKKKT 543
           MGDGNHSPSG PYA LPTRA  K T
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKLT 25


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +3

Query: 417  VTSGRQRLGSAPGIAEVHGRR 479
            V SGRQRLGSAPGIAEVHGRR
Sbjct: 966  VLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q4SDF0 Cluster: Chromosome 3 SCAF14639, whole genome shotgun
            sequence; n=1; Tetraodon nigroviridis|Rep: Chromosome 3
            SCAF14639, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1655

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 57   HSHPAKSQVSHWHCPIFLSSHARVLXXVNLXVXXSAFWATPHNINSKNWFTKVT 218
            HSHP K    +W  P   S+   +    N+    +   A+P NI  K+W+TK +
Sbjct: 1456 HSHPDKKSGEYWIDPDGGSAKDAIRVFCNMEAGETCISASPANIPRKSWWTKAS 1509


>UniRef50_Q4RMA1 Cluster: Chromosome 10 SCAF15019, whole genome
            shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 10
            SCAF15019, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 2113

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -2

Query: 448  AEPSRCLPLVTNSLCEPTRYLSKLLFVTLGHLSITECVAHGSQPGHLLTLALARAVAEST 269
            A P+   P   + L E +    +L  +      +   +A G    H  T A+A   A++ 
Sbjct: 1483 ANPALAAPYQEDHLMEISHAFQRLDLIEAAQEKMRSALALGQNVSHCATSAVADK-AKTL 1541

Query: 268  TRSDTRPTEKIRRETQC 218
            T+SD +P EK+ +  +C
Sbjct: 1542 TKSDDKPAEKVHKPFKC 1558


>UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1;
           Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
           TRNA-dihydrouridine synthase A - Buchnera aphidicola
           subsp. Cinara cedri
          Length = 348

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 729 MY*TYLFIRKICK-Y*IQK*QFKCPKFLKQPMNSFKRKA*KSVSLFKGLSRYLFNISY 559
           +Y   LF+RKI K    QK Q K  KF+K+  N  K+K  K V   K + +++ NI Y
Sbjct: 255 IYKNPLFLRKIDKKIFFQKKQIKIKKFIKKMSNYIKKKIIKGVPAIK-IIKHMLNIFY 311


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 550 ISEFFFLLPL*ADEHTAHLMVSGYRRPWTSAMPGAEPS-RCL 428
           +  F F +       T +L+   +R  WTS +PGA+P  RCL
Sbjct: 22  LDTFIFQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCL 63


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 221 LSFSPDLLSGSRIRSGGRF 277
           LSFSPDLLSGSR R+G  +
Sbjct: 397 LSFSPDLLSGSRFRTGAEY 415


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,497,742
Number of Sequences: 1657284
Number of extensions: 14388094
Number of successful extensions: 34941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34934
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)