Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K16
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     30   2.5  
01_06_0194 - 27368563-27370956                                         30   2.5  
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176...    29   3.3  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    29   5.8  
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251...    29   5.8  
04_04_0437 + 25193263-25194627                                         29   5.8  

>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +1

Query: 394 WSVRTMNLSQAVGSGLALPLALLKSMGDGNHSPSGGPYARLPTRAIKKKTR 546
           W      +    GS LA  L LL  M      PSG  YARL  RA+ +  R
Sbjct: 52  WESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARL-IRALARAGR 101


>01_06_0194 - 27368563-27370956
          Length = 797

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
 Frame = +3

Query: 366 VTNKSLDKYLVGSH-NEFVTSGRQR----LGSAPGIAEVH 470
           V N+SLDKYL G   +E + S  QR    LG+A G+A +H
Sbjct: 583 VENESLDKYLFGERCHESLLSWSQRYRIALGTARGLAYLH 622


>06_01_0230 +
           1765913-1766251,1766365-1766445,1766553-1766651,
           1766748-1766837,1766937-1767000,1767093-1767193,
           1767284-1767393,1767515-1767758,1767852-1768052,
           1768296-1768487,1768594-1768680,1768790-1768918,
           1769276-1769392
          Length = 617

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 635 IASKGKRKNLFHCSKA*VDICLIFHTRLY*RVFFFIALVGRRAYGPPDG-EWLPSPMDFS 459
           +A + +R   FHC K  VD   I H     +V+      G + YGP  G ++  + M FS
Sbjct: 143 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVW---GKTGEKIYGPDTGVDYKDNQMRFS 199


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 442 PSRCLPLVTNSLC-EPTRYLSKLLFVTLGHLSITECVAHGSQPGHLL 305
           P+R L L T+ +C E  +YL+  + V+ G  S+ + +    QP HLL
Sbjct: 223 PTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLL 269


>08_02_1063 +
           24024030-24024506,24024803-24024856,24024965-24025118,
           24025314-24025388,24025511-24025788,24026023-24026253,
           24026522-24026620,24026740-24026889,24027830-24027976,
           24028525-24028575,24028647-24028819,24029018-24029147,
           24029361-24029458,24029655-24029892,24030634-24030837,
           24031003-24031083,24031296-24031535
          Length = 959

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 138 VNLXVXXSAFWATPHNINSKNWFTKVTH*VSRRIFSVGRVSDL 266
           VNL    +  WA P + ++KNW  ++   ++ ++ + G  S+L
Sbjct: 185 VNLATEMAVVWAVPEDEDAKNWKLQLGEKLANQLTTCGYKSNL 227


>04_04_0437 + 25193263-25194627
          Length = 454

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +3

Query: 228 SRRIFSVGRVSDLVVDSATALARASVSKWPG*DPCATHSVML--RCPSVTNKSLDKYLVG 401
           + R++   +V      + T   +  +S W G D C+T+      R P++T++++      
Sbjct: 81  NERLYKAYKVIQKFRRTVTCDPQNIISSWSGADLCSTYKGFFCERPPNITDRTIASVDFN 140

Query: 402 SHNEFVTSGRQRLGSAPGIAEVH 470
            +N   +S ++ + + P +A  H
Sbjct: 141 GYNLQASSLKEFVDALPDLALFH 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,544,763
Number of Sequences: 37544
Number of extensions: 398596
Number of successful extensions: 888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)