Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K16
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    28   9.1  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    28   9.1  
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 339 HSVMLRCPSVTNKSLDKYLVGSHNEFVTSGRQRLGSAPGIAEVHGR 476
           H   L+ P +TN  L+ + +     + T+  + +G    +A +H R
Sbjct: 181 HLDYLQAPRITNNDLEYFFIQREESWYTASEKCIGYGAHLASIHSR 226


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 345 VMLRCPSVTNKSLDKYLVGSHNEFVTSGRQRLGSAPGIAEVHGRR 479
           V +RCP+ TN  +D       NE++  GRQ   S   + E+H RR
Sbjct: 622 VEIRCPNTTNIIIDDV-----NEYIYLGRQINDSNNLLPELHRRR 661


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
            protein R06F6.8a protein.
          Length = 1468

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 388  LSKLLFVTLGHLSITECVAHGSQPG--HLLTLALARAVAESTTRSDTRPTEKIRRETQCV 215
            L +LL   LG  ++    A  S P   H L L L   + E  T S+  P   + R   CV
Sbjct: 814  LRQLLKRNLGVFALELAGACRSLPHFTHALELLLHGVLEEEATSSEPIPDPLLPR---CV 870

Query: 214  TFVNQFFEFI 185
             F+++F EF+
Sbjct: 871  AFIHEFPEFL 880


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
            protein R06F6.8b protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 388  LSKLLFVTLGHLSITECVAHGSQPG--HLLTLALARAVAESTTRSDTRPTEKIRRETQCV 215
            L +LL   LG  ++    A  S P   H L L L   + E  T S+  P   + R   CV
Sbjct: 814  LRQLLKRNLGVFALELAGACRSLPHFTHALELLLHGVLEEEATSSEPIPDPLLPR---CV 870

Query: 214  TFVNQFFEFI 185
             F+++F EF+
Sbjct: 871  AFIHEFPEFL 880


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 105 RLGNANEKLETLLDENDFXRPSTDXKSS 22
           +LG  NE L+ LLD + F  P T+ +S+
Sbjct: 84  KLGKINEVLKILLDFDSFKTPETESQSN 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,925
Number of Sequences: 27780
Number of extensions: 344975
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)