Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_K13
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 62 3e-10
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 62 3e-10
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 60 8e-10
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 53 1e-07
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 38 0.003
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 27 7.3
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 27 9.6
03_01_0649 + 4757352-4758167 27 9.6
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 61.7 bits (143), Expect = 3e-10
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 PGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXX 178
PG G ++ D + F F NSKC+ R P K+TWT +YR++ KK E
Sbjct: 17 PGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRT 76
Query: 179 XXXXXXXXIVGASLSDIMAKRNMKPEV 259
IVGASL I KR KPEV
Sbjct: 77 TKKPYSRSIVGASLEVIQKKRAEKPEV 103
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 61.7 bits (143), Expect = 3e-10
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 PGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXX 178
PG G ++ D + F F NSKC+ R P K+TWT +YR++ KK E
Sbjct: 1027 PGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRT 1086
Query: 179 XXXXXXXXIVGASLSDIMAKRNMKPEV 259
IVGA+L I KR+ KPEV
Sbjct: 1087 TKKPYSRSIVGATLEVIQKKRSEKPEV 1113
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 60.1 bits (139), Expect = 8e-10
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 PGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXX 178
PG G ++ D + F F NSKC+ R P K+TWT +YR++ KK E
Sbjct: 43 PGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRT 102
Query: 179 XXXXXXXXIVGASLSDIMAKRNMKPEV 259
IVGA+L I KR KPEV
Sbjct: 103 TKKPYSRSIVGATLEVIQKKRAEKPEV 129
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/42 (54%), Positives = 25/42 (59%)
Frame = +2
Query: 2 PGHGKXMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 127
PGHG V+ D K F F SKC M+RNPRKV WT YR
Sbjct: 15 PGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +2
Query: 44 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 127
F F SKC M+RNPRKV WT YR
Sbjct: 67 FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 9 MAXPWLKWMEKPSHS*IQNVKPPI**GGILVK*HGLSCTGASSKRAKRKNKQRNVLEGPK 188
M PW W +KPS I ++ P G L++ + T S A ++ + EGP+
Sbjct: 157 MIEPWTPWWKKPSARSI-SLSPD---GSQLIRQVSVEDTDTSDPMADPESSISEIPEGPE 212
Query: 189 SS 194
S+
Sbjct: 213 SA 214
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 35 GKTFTFLNSKCEAAHL-MRRNPRKVTWTVLY 124
G L+S A H+ +RRNP+ + W ++Y
Sbjct: 469 GSAIRQLDSIFSAGHIFLRRNPKALVWAMVY 499
>03_01_0649 + 4757352-4758167
Length = 271
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 282 ACSLCALRTSGFILRLAIM 226
ACS CALRT G +L A++
Sbjct: 85 ACSPCALRTLGAVLAAALL 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,118,131
Number of Sequences: 37544
Number of extensions: 149584
Number of successful extensions: 328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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