Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K12
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.71 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   3.8  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    26   5.0  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 383 FGGVTSCXKVSYTSSESFEKNRNGWSDTPSVTVELRGKNTRFNLSDNFIRLLCQNTNS 556
           +G + +   +  + S  FE     WS TPS T   + KN  F +  N   L+  +T S
Sbjct: 562 YGNMVNDSSIESSDSFVFENTSLSWSPTPS-TALFQLKNLNFTIPRNQFTLVVGSTGS 618


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
 Frame = +2

Query: 182 HRKQNSLKDKHVKGKESASAACET---QVCRESLEEC------LKN----FDKNVLAEMR 322
           + ++N + DK  KGK+ A  +  T   +  RE L E       LK+     ++ V+++M 
Sbjct: 282 NERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMH 341

Query: 323 -----SVDLRSLATIAASSXRXLNDFGGVTSCXKVSYTSSESFEK 442
                S D  SLA   A + +  ND GG+    +     + S +K
Sbjct: 342 ESSLLSKDSSSLAQAVAEAVKNANDLGGLVKRKRTKQEVTSSSQK 386


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 378 TILAVLHLVXKCLTLQVNLLRKTGMVGVILLVLQWSYE 491
           T+   ++L+ + L+++V  L+K  +VG+  L++   YE
Sbjct: 216 TLFLAVNLIDRFLSIKVVSLQKVQLVGLSALLIACKYE 253


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 378 TILAVLHLVXKCLTLQVNLLRKTGMVGVILLVLQWSYE 491
           T+   ++++ + L+L+V  L K  +VG+  L +   YE
Sbjct: 256 TLFLAVNIIDRFLSLRVCSLNKLQLVGIAALFIASKYE 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,245
Number of Sequences: 5004
Number of extensions: 48296
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)