Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K12
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    33   0.29 
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 143 FSQLSCRYGNLFKHRKQNSLKDKHVKGKESASAACET--QVCRESLEECLKNFDKNVLAE 316
           FS       N FK R+   + + H + K++A+A   T  +  + + E C K+  +N L  
Sbjct: 116 FSSSDGHLPNAFKGRETQHIAEYHKQFKKNANAYTGTVREALKLAFETCDKDLAENALPS 175

Query: 317 MRSVDLRSLATIAAS 361
            + V  R  A +AAS
Sbjct: 176 AKGVIDRHAAMVAAS 190


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 24/87 (27%), Positives = 40/87 (45%)
 Frame = +2

Query: 185 RKQNSLKDKHVKGKESASAACETQVCRESLEECLKNFDKNVLAEMRSVDLRSLATIAASS 364
           RK  S +    K KE +SA  ++     SL +  + + K+  + M   DL+ L  +   S
Sbjct: 545 RKLKSDRKLVEKFKEVSSAVSKSLPLLVSLRKIAEEYKKDNSSGM--TDLKKLKPLQGLS 602

Query: 365 XRXLNDFGGVTSCXKVSYTSSESFEKN 445
               +  G + S  KVS +  E+F +N
Sbjct: 603 KPFGDAVGALVSITKVSRSELETFVRN 629


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,673
Number of Sequences: 27780
Number of extensions: 267943
Number of successful extensions: 690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)