Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K09
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.28 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.49 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.9  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 308 LVVQHLSVLRIHRGPSRKVDELCHMPEQCRLHCSVLLGAL 189
           L+VQ + VLR H     KV ELC     C  + S L G +
Sbjct: 146 LMVQAIQVLRFHLLELEKVHELC--DNFCHRYISCLKGKM 183


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 617 LNLKNDHLRKRFDALKYDVKKIEEVVY 697
           L  +N HL+   D LK +++K++++VY
Sbjct: 170 LERENCHLKFVTDTLKKELEKLQKIVY 196


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 376 ERYQITVALGHESPVILILEVIGWW 302
           E Y   VAL  ++P + IL  IG W
Sbjct: 575 EMYDRVVALREKNPDLKILLAIGGW 599


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -1

Query: 198 WSTVVASREIWSTSLHIVRIXXRSACAWSRCF 103
           W TV   R      L+  +I    AC WS  F
Sbjct: 528 WQTVYNHRPWQQLHLNKKQILGGEACLWSEQF 559


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 266 PSRKVDELCHMPEQCRLHCSVLLGALWSLP 177
           PS+ + E    PEQ +     ++G  +SLP
Sbjct: 453 PSQYIHEPWTAPEQVQRAAKCIIGKDYSLP 482


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 287 LKDAVPPTDYFKYQDHWRFMTQRYCY 364
           +KD+VP T  + +   W     + CY
Sbjct: 49  VKDSVPMTCRYTFLLEWYHTLSKACY 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,883
Number of Sequences: 336
Number of extensions: 3383
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)