Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_K09
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 110 2e-25
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 36 0.005
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 31 0.13
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.40
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 27 3.8
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 8.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.7
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 110 bits (264), Expect = 2e-25
Identities = 63/157 (40%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
Frame = +2
Query: 275 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 430
G A L P Y+KY W Q+ YL L W L+K + L S + +I
Sbjct: 83 GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139
Query: 431 LGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF 610
L V + FHL IE YL +L++CSEL+R +VNSV G+Y P + ++++ F
Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSF 199
Query: 611 RLLNLKNDHLRKRFDALKYDVKKIEEVVYDLXIRGLL 721
++L+LKND LR+ FD LKYD+K+ E+VVYDL I L+
Sbjct: 200 QVLSLKNDSLRRHFDGLKYDLKRSEDVVYDLRIHKLV 236
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 36.3 bits (80), Expect = 0.005
Identities = 40/213 (18%), Positives = 83/213 (38%), Gaps = 5/213 (2%)
Frame = +2
Query: 89 FSXFQKHLDQAQALRXXIRTICKEVDQISREATTVLQVIHYNEAGIAPACGKARLLFEKA 268
F F+ L + Q R I + +E+ S+ +L ++ P +FEK
Sbjct: 5 FLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKK 64
Query: 269 -HDGYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSP 445
H LK + + K+ Q Y + WL+ G L S + + + ++
Sbjct: 65 IHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCKDSSFRISINF 124
Query: 446 VELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF----R 613
+ DY++G+ M E+ R V + ++ ++ + KF+ L+
Sbjct: 125 I-----------DYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEH 173
Query: 614 LLNLKNDHLRKRFDALKYDVKKIEEVVYDLXIR 712
L + L+++ ++ + K+E + Y +R
Sbjct: 174 LPSKVKSELQQKLSVMENSISKVEGICYSKILR 206
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 497 LLTMCSELSRLAVNSVTRGDYERPLRISKFV-MELNAGFRLLNLKNDHLRKRFDALKYDV 673
L T+ S R +N V R E L + + M LN F L +ND AL Y
Sbjct: 1766 LETISSVHHRSPINQVVRNLNESQLSLDSVISMNLNKEFALTKTENDFTDDNGRALNYFS 1825
Query: 674 KKIEEV 691
+K+EE+
Sbjct: 1826 QKLEEL 1831
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 293 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 469
DA+ F H F+T Y Y I T+ + KG + TM + L + +
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196
Query: 470 LDIEDYLIGLLTMCSELSR 526
+D Y+ L + LSR
Sbjct: 197 IDFPIYVFSSLFLYHPLSR 215
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 252 RRALPHAGAMPASL*CITWSTVVASREIWSTSLHI 148
RR +P PA C++W+ V + +WS+ HI
Sbjct: 128 RRCIPDEH--PAKRLCLSWAIVGMNAWVWSSVFHI 160
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 549 RVTEFTARRDNSEHIVNSPIR*SSMSKWKPSFNSTGLTPNISAMVSCEARIPFSSHI 379
R + T R NSE+ +N+P S + F G T +V E P SS +
Sbjct: 192 RAKDETMRNQNSEYALNNPNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKL 248
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 410 HETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSR 526
H T+AEI + KE + D D+ G +C+ L R
Sbjct: 4051 HATLAEIYCFTCSSWKEPCYFDDSDFYFGTKILCNILYR 4089
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,401
Number of Sequences: 5004
Number of extensions: 54561
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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