Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_K09
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 159 3e-39
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 46 2e-05
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 31 1.3
07_03_0132 - 14011468-14012124 29 5.2
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 29 5.2
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 28 6.9
03_05_0071 - 20491521-20492813 28 6.9
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 6.9
09_02_0136 + 4747985-4748419 28 9.1
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 28 9.1
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 159 bits (385), Expect = 3e-39
Identities = 89/233 (38%), Positives = 128/233 (54%), Gaps = 21/233 (9%)
Frame = +2
Query: 89 FSXFQKHLDQAQALRXXIRTICKEVDQISREATTVLQVIHYNEAGIAPACGKARLLFEKA 268
F F+ LD++ LR IR + EV+ SR A+ L ++H +A GKA+ E
Sbjct: 81 FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKAQVEVI 139
Query: 269 HDGYARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVS 442
Y+RL + + P Y++Y WR TQ ++A WLE G L H E LG
Sbjct: 140 KGLYSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCM 199
Query: 443 P------------------VELKEG-FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYER 565
P +++ G F LD+EDYL GL M ++ R VN VT GDY+
Sbjct: 200 PGPCDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDC 259
Query: 566 PLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIEEVVYDLXIRGLLP 724
P ++ F+ +L+A FR+LNL+ND LRK+FD +KYD++++EEV YD+ IRGL+P
Sbjct: 260 PRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYDVKIRGLVP 312
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 458 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRL---LNLK 628
E +++ DY++G+ + EL RLA+ ++ G+ E I FV ++ L L
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDIYRELTLVVPLMDD 185
Query: 629 NDHLRKRFDALKYDVKKIEEVVYDLXIRG 715
N ++K+ + + V KIE + + +RG
Sbjct: 186 NSEMKKKMETMLQSVVKIENACFSVHVRG 214
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 206 HYNEAGIAPACGKARLLFEKAHDGYARLKDAVPPTDY 316
HYN + AP+ G ++ L DGYA L++ PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242
>07_03_0132 - 14011468-14012124
Length = 218
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 538 LGDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENRGSRLRSXH-QG 714
+ +PR + A Q G +RRL+A EER + R R + R SR R H
Sbjct: 40 IAEPREVVATSTGAQA--GRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDA 97
Query: 715 AAAQGRCGPRT 747
G G R+
Sbjct: 98 GGGDGATGRRS 108
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 518 ILSTSSIAQSDSLQCPNGNLLLTP---LD*HLIFQPWSRVKPGFPS 390
+LSTS +Q L CP GNL+ P L L F W R G+ S
Sbjct: 881 VLSTSECSQPIMLGCPTGNLIPYPSIRLSFFLSFHGW-RGSQGYDS 925
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 314 NRLVVQHLSVL--RIHRGPSRKVDELCHMPEQCRLHCSVLLGALWSL 180
N + + HLS+L R+ R +D L MPE C L + W++
Sbjct: 770 NSMRIPHLSILDLRVVTMEPRDLDVLARMPELCSLRLDITRRFPWTV 816
>03_05_0071 - 20491521-20492813
Length = 430
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 407 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 544
SH+ ++ G +P + EGF + D + LL SR+A V
Sbjct: 49 SHQRQMQVFGQAPDRVVEGFSEEFLDAFLTLLRRAHRHSRIAATVV 94
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 532 RELGDPRRLRAPPEDL-QVRDGTER-RLQAIELEERSFAQT 648
+ELG+PRR R P+ L QV ER L E + R+F++T
Sbjct: 121 QELGNPRRGRPTPQVLKQVWQSGERYTLDQFESKSRAFSKT 161
>09_02_0136 + 4747985-4748419
Length = 144
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 544 DPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENRGSRLRSXH-QGAA 720
+PR + A Q G +RRL+A EER + R R + R SR R H
Sbjct: 42 EPREVVATSTGAQA--GRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGG 99
Query: 721 AQGRCGPRT 747
G G R+
Sbjct: 100 GDGATGRRS 108
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 575 ISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIEEVVYDLXIRGLLPKG 730
+ K +EL AG R + + LRK+ A K+ ++ V+ D RGLL G
Sbjct: 109 VEKAAVELLAG-RAFTVSD--LRKKLRAKKFPDNAVDSVIADFKSRGLLNDG 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,153,962
Number of Sequences: 37544
Number of extensions: 378610
Number of successful extensions: 1136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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