Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_K09
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036693-1|AAK29785.1| 391|Caenorhabditis elegans Hypothetical ... 29 4.6
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79754-12|CAD57695.1| 440|Caenorhabditis elegans Hypothetical p... 28 8.1
Z79754-11|CAB02100.1| 478|Caenorhabditis elegans Hypothetical p... 28 8.1
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 28 8.1
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 28 8.1
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 8.1
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 8.1
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 28 8.1
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 28 8.1
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 28 8.1
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 28 8.1
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 28 8.1
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 28 8.1
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 28 8.1
>AF036693-1|AAK29785.1| 391|Caenorhabditis elegans Hypothetical
protein C49A9.7 protein.
Length = 391
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 126 HYAXRFGLYVKRLTKFLGKRPQCSK*YTTMKPALLRHVAKLVYFSRRP 269
+Y +FG + R+ +G P C+ +T + ++ R+ A + +RP
Sbjct: 124 YYVWKFGSFYCRINNLMGITPICASVFTMIVMSIERYYAIIHPLKKRP 171
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>Z79754-12|CAD57695.1| 440|Caenorhabditis elegans Hypothetical
protein F25H2.12b protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 596 LNAGFRLLNLKNDHLRKRFDALK-YDVKKIEEVVYDLXI 709
LNA FR ++ N +RKR A K +++ +I E++ + I
Sbjct: 68 LNASFRTISSANGLVRKRIKAKKQHEIDRIVELISQIQI 106
>Z79754-11|CAB02100.1| 478|Caenorhabditis elegans Hypothetical
protein F25H2.12a protein.
Length = 478
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 596 LNAGFRLLNLKNDHLRKRFDALK-YDVKKIEEVVYDLXI 709
LNA FR ++ N +RKR A K +++ +I E++ + I
Sbjct: 106 LNASFRTISSANGLVRKRIKAKKQHEIDRIVELISQIQI 144
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 580 QVRDGTERRLQAIELEERSFAQTLRRPKVRREENRGSRLRSXHQGAAAQ 726
+VR+ ERR + +ER A R + + EE +RL + AAA+
Sbjct: 597 RVREEEERREKERREQERRIAAEKERKRRQEEEEEIARLNELQRAAAAR 645
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 580 QVRDGTERRLQAIELEERSFAQTLRRPKVRREENRGSRLRSXHQGAAAQ 726
+VR+ ERR + +ER A R + + EE +RL + AAA+
Sbjct: 597 RVREEEERREKERREQERRIAAEKERKRRQEEEEEIARLNELQRAAAAR 645
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 580 QVRDGTERRLQAIELEERSFAQTLRRPKVRREENRGSRLRSXHQGAAAQ 726
+VR+ ERR + +ER A R + + EE +RL + AAA+
Sbjct: 597 RVREEEERREKERREQERRIAAEKERKRRQEEEEEIARLNELQRAAAAR 645
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 580 QVRDGTERRLQAIELEERSFAQTLRRPKVRREENRGSRLRSXHQGAAAQ 726
+VR+ ERR + +ER A R + + EE +RL + AAA+
Sbjct: 597 RVREEEERREKERREQERRIAAEKERKRRQEEEEEIARLNELQRAAAAR 645
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 550 RRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR-GSRLRSXH 708
R PP D V R + +EER++ + R K+RREE + S L+ H
Sbjct: 728 REYSMPPADPPVITEKYERDEYSRVEERTYPVPVARNKMRREETQMQSSLQQMH 781
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform a protein.
Length = 1004
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 550 RRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR-GSRLRSXH 708
R PP D V R + +EER++ + R K+RREE + S L+ H
Sbjct: 864 REYSMPPADPPVITEKYERDEYSRVEERTYPVPVARNKMRREETQMQSSLQQMH 917
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 550 RRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR-GSRLRSXH 708
R PP D V R + +EER++ + R K+RREE + S L+ H
Sbjct: 959 REYSMPPADPPVITEKYERDEYSRVEERTYPVPVARNKMRREETQMQSSLQQMH 1012
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 523 SSGREL---GDPRRLRAPPEDLQVRDGTERRLQAIELEERSFAQTLRRPKVRREENR--G 687
S+ REL GD ++ A PED Q D +L ++ TL+ V EE R
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVD---TKLAELQAGIDGLLATLQEQNVHLEEKREQA 2665
Query: 688 SRLRSXHQGAAAQ 726
+R++S Q AA +
Sbjct: 2666 NRVQSESQKAAGK 2678
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,704,853
Number of Sequences: 27780
Number of extensions: 307574
Number of successful extensions: 853
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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