Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K07
         (828 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CQ38 Cluster: WD40 repeat protein; n=3; Cryptosporidi...    37   0.54 
UniRef50_Q09231 Cluster: Uncharacterized protein C09F5.1; n=2; C...    35   2.2  
UniRef50_Q4RRR9 Cluster: Chromosome 16 SCAF15002, whole genome s...    35   2.9  
UniRef50_UPI00006D0019 Cluster: Smr domain containing protein; n...    34   3.8  
UniRef50_Q17AU7 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  
UniRef50_Q1E5E5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_Q5CQ38 Cluster: WD40 repeat protein; n=3;
           Cryptosporidium|Rep: WD40 repeat protein -
           Cryptosporidium parvum Iowa II
          Length = 491

 Score = 37.1 bits (82), Expect = 0.54
 Identities = 26/99 (26%), Positives = 44/99 (44%)
 Frame = +3

Query: 159 DHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSR 338
           DHL +++V N+    L N+E   KV +    K  +  K  +  K  L  +GK+I S    
Sbjct: 84  DHLDQESVNNIKSDSLSNLETFNKVKTGKIYKYIQDYKSRKNDK--LIKSGKSIISQSK- 140

Query: 339 KVFTPRAVNVGSLIYTDEDGDKGCTFEEIEFTKPKHYDN 455
                  +++  L   +     GC  + +EF K +H +N
Sbjct: 141 -------IDIKRLTNANIQSPSGCVVKSLEFHKGQHIEN 172


>UniRef50_Q09231 Cluster: Uncharacterized protein C09F5.1; n=2;
           Caenorhabditis|Rep: Uncharacterized protein C09F5.1 -
           Caenorhabditis elegans
          Length = 571

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 4/154 (2%)
 Frame = +3

Query: 183 KNVSRQP--LHNIENMGKVVSAGPTKPNEPTKKGETKKSFLSNTGKAIQSTP--SRKVFT 350
           ++VSR+P  LH   N G+ +   P         G T  SFL+ +G +  S P   R   T
Sbjct: 61  RDVSREPSFLHTSANYGQHIETSPPPVQRYNVSGATNSSFLNTSGDSRVSYPGADRSNDT 120

Query: 351 PRAVNVGSLIYTDEDGDKGCTFEEIEFTKPKHYDNYQRDLFDFIPLSEPCHLKQLXXXXX 530
               N G  I+     D G    E   + P    +    + + I                
Sbjct: 121 TVINNYGYDIHEVRTDDGGARIIETHGSGPLRETSRIEHVEETITRPSAMRSSSAAAQRS 180

Query: 531 XXXXXXXHSMELECSYQDEFYTDDFSNESLPEED 632
                   +     SY+ EF +D   NESL  +D
Sbjct: 181 SSNIFTVPAPAAHVSYRQEFASD---NESLARKD 211


>UniRef50_Q4RRR9 Cluster: Chromosome 16 SCAF15002, whole genome
            shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 16
            SCAF15002, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 875

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 180  VKNVSRQPLHNIENMGKVVS----AGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSRKVF 347
            +K+ S++P+  +    +  +    AGPT+PNE T   E +K F    GK ++     K  
Sbjct: 797  IKDESKEPIVEVRTEDECTANHNAAGPTEPNETTPLTEPEKIFSEEKGK-LEEAELSKAL 855

Query: 348  TPRAVNVGSLIYTD 389
            T  A    S++ T+
Sbjct: 856  TEIAAEHNSILQTN 869


>UniRef50_UPI00006D0019 Cluster: Smr domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: Smr domain containing
           protein - Tetrahymena thermophila SB210
          Length = 673

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = +3

Query: 87  DIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSAGPTK-PNE 263
           +++ +   KL F+L    +  IFG+  T++ +KN  R   HN+ N+ + + +  +K  N+
Sbjct: 69  EVQNVEEQKLDFELKIPQIQQIFGEQFTKKQIKNALRD--HNM-NLDQTIDSLLSKNSNQ 125

Query: 264 PTKKGETKKSFLSNTGKAIQS 326
            ++K ++      N+GK + S
Sbjct: 126 NSQKSQSN----DNSGKKLAS 142


>UniRef50_Q17AU7 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 1058

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 252 KPNEPTKKGETKKSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTDEDGDKGCTFEE 422
           KP++P  K  TK  +LS   + I   P+ +  TP ++   S +      D+  TF E
Sbjct: 662 KPDDPILKKGTKVEYLSTPAREIYLVPADEPTTPHSLGSSSELSMASRADESLTFSE 718


>UniRef50_Q1E5E5 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 1262

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 222 MGKVVSAGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSRK--VFTPRAVNVGSLIYTDED 395
           +G  V   P K N P      +    S+  K +Q  PS +  VFTP    V      + D
Sbjct: 664 VGGPVGVQPVKSNGPWSSLIRRNRSGSDVPKVLQKPPSGRAPVFTPEKSPVNRNHADEND 723

Query: 396 GDKGCTFEEIEF 431
           GD   T  EI+F
Sbjct: 724 GDHEATANEIDF 735


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,210,756
Number of Sequences: 1657284
Number of extensions: 13519172
Number of successful extensions: 30728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30697
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)