Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K07
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    33   0.33 
U97008-1|AAB52310.1|  370|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    28   9.4  

>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 4/154 (2%)
 Frame = +3

Query: 183 KNVSRQP--LHNIENMGKVVSAGPTKPNEPTKKGETKKSFLSNTGKAIQSTP--SRKVFT 350
           ++VSR+P  LH   N G+ +   P         G T  SFL+ +G +  S P   R   T
Sbjct: 61  RDVSREPSFLHTSANYGQHIETSPPPVQRYNVSGATNSSFLNTSGDSRVSYPGADRSNDT 120

Query: 351 PRAVNVGSLIYTDEDGDKGCTFEEIEFTKPKHYDNYQRDLFDFIPLSEPCHLKQLXXXXX 530
               N G  I+     D G    E   + P    +    + + I                
Sbjct: 121 TVINNYGYDIHEVRTDDGGARIIETHGSGPLRETSRIEHVEETITRPSAMRSSSAAAQRS 180

Query: 531 XXXXXXXHSMELECSYQDEFYTDDFSNESLPEED 632
                   +     SY+ EF +D   NESL  +D
Sbjct: 181 SSNIFTVPAPAAHVSYRQEFASD---NESLARKD 211


>U97008-1|AAB52310.1|  370|Caenorhabditis elegans Hypothetical
           protein C03G6.10 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
 Frame = +3

Query: 84  DDIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKPNE 263
           + + K ++  L +    +  F +  D+   QAV ++    L+N  N+G     GPT  N 
Sbjct: 97  ETMTKNTIDALVYLEEKLEKFRLSADNPHWQAVSDLELY-LNNGSNLGLADKFGPTFENS 155

Query: 264 PTKKGETKKSFLSNTGKAIQST-----PSRKVFT 350
             +  E K S L ++ KA+Q+      P++K++T
Sbjct: 156 VHESFEPKNS-LPSSLKAVQNNKLNHCPTKKIWT 188


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +3

Query: 174  QAVKNVSRQPLHNIENMGKVVSAGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSRKVFTP 353
            Q  K+V   P+       K     PT+P +P K  E KK       +  Q TPS K  TP
Sbjct: 1313 QRKKHVQVPPVTKTPVTPKTSIPPPTEPEKPIKPSEQKKPNAIPVERPKQPTPS-KARTP 1371


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 311 ESNSEHTIT*SVHPSCCECGFSHIY 385
           E+N ++      HPS CEC F H Y
Sbjct: 225 ETNGQYDNNQEPHPSNCECVFHHDY 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,193
Number of Sequences: 27780
Number of extensions: 344582
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)