Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K06
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    31   0.61 
02_05_0482 + 29382696-29383251,29383376-29383692                       29   1.8  
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135...    28   5.6  

>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 136 GSTWRPKISKRSTTKHKNGLYRFF 207
           GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361


>02_05_0482 + 29382696-29383251,29383376-29383692
          Length = 290

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 148 ARSNLGGKVPKPSARAGRERWGAG 77
           +R  LG K P P  R G+ER G G
Sbjct: 39  SRKRLGAKPPSPQRRGGQEREGGG 62


>05_01_0188 -
           1357074-1357098,1357811-1357941,1358572-1358667,
           1358736-1358769,1358867-1358958,1359273-1359332,
           1359376-1359435,1360016-1360525,1360645-1360719,
           1360809-1361015
          Length = 429

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 399 TYSTVINNINKYQQRYKIAFRKNIRSLKCIYFCLAYKKKRIAYLVFYSFSLIINS 235
           T  TV++  N Y   +      N+     I F   +K KR+AYL  Y  + +IN+
Sbjct: 35  TTKTVLDPWNPYFPLWPPEIPPNLGLNGAICFIEDWKMKRMAYLASYRSTCVINA 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,183,987
Number of Sequences: 37544
Number of extensions: 210931
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)