Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K05
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical ...   102   4e-22
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    97   2e-20
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        91   7e-19
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    34   0.15 
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    33   0.19 
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    28   9.5  

>AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical
           protein Y44A6D.5 protein.
          Length = 393

 Score =  102 bits (244), Expect = 4e-22
 Identities = 49/89 (55%), Positives = 63/89 (70%)
 Frame = +1

Query: 574 SFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLN 753
           SF+Y +L V  +   Q  P   AK LGFG+YF+DHM+ I +  +  GW  P+I PF+N +
Sbjct: 23  SFQYANLVVEKSTKKQRIPSDPAK-LGFGRYFSDHMIDIDWDVK-EGWIAPKICPFQNFS 80

Query: 754 IHPAAKALHYAIQLFEGLKAYRGVDDKIR 840
           IHPAAK LHYAI++FEG+KAY GVD KIR
Sbjct: 81  IHPAAKVLHYAIEIFEGMKAYHGVDGKIR 109


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
 Frame = +1

Query: 535 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 711
           P ++ H +   + +F + DL+++LA P QL  KP +  +L FG  + D+M+   +  E G
Sbjct: 31  PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWDAERG 90

Query: 712 GWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDDKIR 840
            W  P+I P   L IHP AK LHYA +LFEG+KAYRG+D+KIR
Sbjct: 91  -WHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIR 132


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
 Frame = +1

Query: 535 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 711
           P ++ H +   + +F + DL+++LA P QL  KP +  +L FG  + D+M+   +  E G
Sbjct: 11  PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWIAERG 70

Query: 712 GWQKPEIMPFENLNIHPAAKALHYAIQLF-EGLKAYRGVDDKIR 840
            W  P+I P   L IHP AK LHYA +LF EG+KAYRG+D+KIR
Sbjct: 71  -WHHPKIEPIGELKIHPGAKVLHYASELFSEGMKAYRGIDNKIR 113


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
 Frame = +1

Query: 385 NFKMPIRRSQVLVKWIFENQHKLQTIRWCSSSLRYKELED----SVQADHVAP-SPTQKP 549
           N +  I  +  ++   FENQ K Q+I         K L D    S+QA  V+  +PT   
Sbjct: 337 NIRQKITDASRIISTNFENQRKEQSIVVQQQVDELKVLPDLTDSSIQARSVSVVAPTAPT 396

Query: 550 HPQITPEISFKYEDLQVRLAAPYQLTPKPEAKELGFGKYF 669
           HPQ+ P+++      QV L    Q+ P+ +  +  +  ++
Sbjct: 397 HPQVAPQVA-----PQVALQTAQQVAPQVQQPQQPYNNFW 431


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 499 EDSVQADHVAPSPTQKPHPQITPEISFKYEDLQVRLAAPYQLTPK 633
           E++    HV P PT+K   ++TP++   +++      AP+ + P+
Sbjct: 436 EETTTKSHVVPKPTKKGTVKVTPKLELSFDEPTEITKAPHPVKPR 480


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 457 TIRWCSSSLRYKELEDSVQ-ADHVAPSPTQKPHPQITP 567
           TI  C + L Y +L +     +HV   P  KP P  TP
Sbjct: 813 TINRCPAGLFYSKLNNRCDYKEHVEDCPEYKPTPSTTP 850


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,338
Number of Sequences: 27780
Number of extensions: 395532
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)