Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K01
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    28   1.1  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    28   1.1  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   3.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   4.6  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.6  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   4.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   6.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.0  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 312 REALDSLSKYPLPLNSGAECAILRGFQKKLCIFLDKRLEVY 434
           R+A DS+   P+  +  ++   L+G    +C  L+K+   Y
Sbjct: 31  RKAYDSMKSCPITFHRPSQALALKGIGPTICAKLEKKWNAY 71


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
 Frame = +3

Query: 300 EPMLREALDSLSKYP---LPLNSGAECAILR--GFQKKLCI-----FLDKRLEVYNSNLN 449
           E    + LDS+ +Y     PL+   EC  +R   F  +L +     +L+ R+  Y SNL 
Sbjct: 144 EESKNKILDSIHEYEKHYTPLSEAEECTFVRIVDFGAELIVHKLENYLESRIVYYLSNLR 203

Query: 450 DCKDEECIATHGET 491
             +    ++ HGE+
Sbjct: 204 TRRRSIWLSRHGES 217


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 315 EALDSLSKYPLPLNSGAECAILRGFQKKL-CIFLDKR 422
           EAL  +  +PLP+    + + +RG   KL C F  K+
Sbjct: 498 EALQYIVNFPLPMLKALDVSWIRGMNDKLVCDFESKK 534


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 208 LLPTVFMIEMFGNSSYLRYNRISSRFFFY 122
           LLP V + E + N  +LRY    S F+FY
Sbjct: 328 LLPPVSVAERYANEFFLRY---QSFFYFY 353


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 324 LMLLLASALVYCLFPWLPRVTLRATPGTSDLAVSF 220
           L L    +L +C+FPWLP +   A      + V F
Sbjct: 496 LKLKKNDSLHHCIFPWLPYLEKHADSLLQSVLVQF 530


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +3

Query: 294 KLEPMLREALDSLSKYPLPLNSGAECAILRGFQ-KKLCIFLDKRLEVY-----NSNLNDC 455
           ++E  L  A+   S   LP+N   EC I  G     L + ++K L  Y     N N NDC
Sbjct: 139 EIESALPPAMFDASFIFLPINDTNECGIESGSHWSLLVVSVEKGLGWYYDSMSNGNTNDC 198


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 357 SGAECAILRGFQKKLCIFLDKRLEVYNSNLNDCKDEE 467
           S A  AIL G+  +LCI+ D+        +N+  DE+
Sbjct: 392 SNARVAILEGYSNRLCIW-DRIERSKTGEMNNVLDEK 427


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 376 IAHSAPEFN--GKGYLERESNASLSIGSS 296
           + H+   F   G G+  R S  SLS+GSS
Sbjct: 242 VTHNTSNFRPEGGGHRHRRSTGSLSVGSS 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,282
Number of Sequences: 5004
Number of extensions: 40350
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)