Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_K01
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.23 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.71 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.71 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.71 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.71 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 247 WNIGFGRFLLYVILLPTVFMIEMFGNSSYLRYNRISSRFFFYR 119
           W   FGR      + P   +    G S YLR+  +S+R F+Y+
Sbjct: 248 WVASFGR----PKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQ 286


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 67  YFKMYLYLNCN-IFCELIYDKRKNGN*-FDYILNTKNFQTFQS*ILWA 204
           ++K  ++L+ N IF  L  +++      F+ + N K+FQTF     WA
Sbjct: 84  WYKQGMFLSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYKTAAWA 131


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 67  YFKMYLYLNCN-IFCELIYDKRKNGN*-FDYILNTKNFQTFQS*ILWA 204
           ++K  ++L+ N IF  L  +++      F+ + N K+FQTF     WA
Sbjct: 84  WYKQGMFLSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYKTAAWA 131


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 186 LKCLEILRI*DIIESVPVFSFIVNKL 109
           LKCLE L    +I  VP+  F+V  L
Sbjct: 396 LKCLEYLFFFKMIGDVPIDDFLVEML 421


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 186 LKCLEILRI*DIIESVPVFSFIVNKL 109
           LKCLE L    +I  VP+  F+V  L
Sbjct: 396 LKCLEYLFFFKMIGDVPIDDFLVEML 421


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 246 GTSDLAVSFCTLFCCP 199
           GT D+ +S C+L C P
Sbjct: 440 GTKDIPISACSLPCEP 455


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 246 GTSDLAVSFCTLFCCP 199
           GT D+ +S C+L C P
Sbjct: 530 GTKDIPISACSLPCEP 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,625
Number of Sequences: 438
Number of extensions: 2984
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)