Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_J22
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 2.0
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 3.5
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 4.6
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 26 4.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.6
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 26 4.6
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 6.1
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 26 6.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.1
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.1
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 25 8.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 8.1
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 42 PTPLPIVGNLLSVLWESRKFKCH--HLIWQSWSQKYG 146
PTPL +V ++L + +R F C H + + WS ++G
Sbjct: 398 PTPLYLVSDILQLATHNRSFICSLPHFL-RRWSNEHG 433
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 408 HILRLCKRS*NGSCNRNSLNISARNVWSCATLGHRRKPIPVSFQTISWYRRTHQAF 241
HI R C+ + S R + S N ++C + GH+ + + + S + H++F
Sbjct: 93 HIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSF 148
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 473 VEHLIDQDRLSSIGQTQLYEGFTFFAYVNVHE 378
++HL D RL +I T Y YVN+H+
Sbjct: 408 IDHLYDSLRLLAISVTMKYVRNQTILYVNLHD 439
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 18 RGLCYPPGPTPLPIVGNLLSVLWESRK 98
R C G TPL + G ++S +WE+R+
Sbjct: 197 RFFCGCFGCTPLTLAGGVISDVWETRE 223
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = -2
Query: 385 FMKREL*PKFFKYFSTKRLVLCHVGPSEKTNPSFFPNDLMV*KNPSGLPSNTSRFETSLM 206
F+++E P K F R G S + ++ S + T+ ET+
Sbjct: 59 FLRQETIPFVDKIFDVLREKSYLEGASNMPSTGMVTEEVSRYSPTSSMIPATNSMETNFN 118
Query: 205 SSIPVTTTTLMDPSLKPNRF 146
+S+P T PS PN F
Sbjct: 119 NSLPAVGKTNTFPSQVPNMF 138
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 27 CYPPGPTPLPIVGNLLSVLWESRKFKC 107
C+PP P PIVGN + + + C
Sbjct: 408 CHPPFPWMSPIVGNSMVTVANGHNWMC 434
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -1
Query: 326 PVPRWAIGENQSQFLSKRSHGI-EEPIRPSFKHFSIRNFSDEFYPCYHYH 180
P P ++ GE S FL+ HGI P S + +DE + YH
Sbjct: 1303 PPPNYSCGEYFSSFLNSSGHGIVYNPEAYSSCQYCPYKNADELMVGFGYH 1352
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 418 YSCVWPMLESRSWSIRCSTLQ*STYFGDWL 507
YSC+W LES S++ R + + YF D L
Sbjct: 42 YSCIWEELESGSFNTRVNIM----YFVDTL 67
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 18 RGLCYPPGPTPLPIVGNLLSVLWESRKFK 104
+GL Y P + +P+ L +VL+ S KF+
Sbjct: 17 KGLQYTPLASSIPLENGLQNVLYPSSKFQ 45
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 150 LLGLRLGSINVVVVTGIELIREVSNREVFEGRPDGFFYTMRSFGKKLGLVFSDGPTW 320
+ G+ G +N V + I + R ++G + FF S G +G F+D TW
Sbjct: 186 IAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGYFADQYTW 242
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 483 VNILWRLVAGKRYDLXDQRLKKLCSLVMRLFKLXDMSGGILNFLPFLXHFVPR 641
VN+ LV R + + + +LV++ ++L + G FLP L VP+
Sbjct: 202 VNMYPLLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHLLRVVPQ 254
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 256 NPSGLPSNTSRFETSLMSSIPVTTTTL 176
N S LPS S T +SSIP TT+++
Sbjct: 115 NSSSLPSIPSSSSTPSISSIPHTTSSV 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,883
Number of Sequences: 5004
Number of extensions: 70712
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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