Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J20
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    50   9e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   2.8  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    25   3.7  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   8.6  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   8.6  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    23   8.6  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 50.0 bits (114), Expect = 9e-08
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +1

Query: 100 RHGLIRKYGLNICRQCFREYAHDIGFKK 183
           R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 27  RLGLIRKYGLNISRQSFREYANDIGFVK 54



 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 21 MGHANLWSSHPR 56
          M H N+W SHPR
Sbjct: 1  MAHENVWFSHPR 12


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 20  NG-PRKSLVFSPSQSPDKDLGHADP---APTGMA*SASTV*TYADSASES 157
           NG P+KS+ FS S +     GH  P   A T ++ S S+   +A  AS +
Sbjct: 384 NGEPQKSIEFSESGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPASSA 433


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +3

Query: 63  RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRVCS*HRIQEAGL 191
           +T +S +  LL+ A  +N  PQ+RFEH +  L+RV   +  ++A L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 63  RTRISVMPILLQQAW 107
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 155 SLKHCLHMFKPYLRIKP 105
           S+K C     PYL +KP
Sbjct: 54  SMKRCRETIAPYLELKP 70


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 39  WSSHPRSLRTRISVMPILLQQAW 107
           W+ HP  ++T + +   + ++AW
Sbjct: 86  WNPHPEDMKTIVPIHNAVNERAW 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 884,675
Number of Sequences: 5004
Number of extensions: 14381
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)