Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J20
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    59   6e-10
Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical pr...    32   0.082
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    31   0.14 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   0.58 
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   1.3  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    27   4.1  
Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        26   7.2  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    26   7.2  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    26   7.2  
Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z49068-3|CAA88862.1|  650|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase pr...    25   9.5  
L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase pr...    25   9.5  
AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line hel...    25   9.5  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 103 HGLIRKYGLNICRQCFREYAHDIGFKKLD 189
           HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 28  HGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical
           protein T25B9.8 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 122 YLRIKPCLLEQDRHDRDPCPETARVRRPKICVAH 21
           Y+ I  C++  D++D D   E AR++R K CV+H
Sbjct: 311 YIMIYVCVMN-DKYDMDKAKELARMQRFKCCVSH 343


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
            protein Y57A10A.31 protein.
          Length = 1048

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 149  KHCLHMFKPYLRIKPCLLEQDRHDRDPCPETARVRRPKICVAHFKK 12
            K C    + Y R   CL E   H  D C E AR+RRP+  +A ++K
Sbjct: 923  KKCEACDRSYCR--KCLAEP--HPDDTCEEFARIRRPEDSIARYQK 964


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 81  MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 182
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 81  MPILLQQAWLNPQVRFEHMQTVLQRV 158
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 69  RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 170
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 42   SSHPRSLRTRISVMPILLQQAWLNPQVR 125
            SS  R L  R +  P LLQ A+ NP VR
Sbjct: 1184 SSFSRFLSLRRTAKPSLLQGAYTNPNVR 1211


>Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical
           protein F49B2.2 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 6   IXFLKMGHANLWSSHPRSLRTRISVMPILLQQ---AWL-NPQVRFEHMQTVLQ 152
           + F KM  ++LW ++   +RT + +   LL +    W+     R +++QT +Q
Sbjct: 202 VEFSKMEKSSLWMTNATHIRTLVCIKSHLLNEFLKHWIQGSNPRMKYLQTSVQ 254


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H  + CPE  + R P++C
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVC 284



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H  + CPE  + R P++C
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVC 398


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H  + CPE  + R P++C
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVC 284



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H  + CPE  + R P++C
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVC 398


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
           helicase protein 2 protein.
          Length = 974

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H  + CPE  + R P++C
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVC 284



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H  + CPE  + R P++C
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVC 398


>Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical
           protein K01C8.3b protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +3

Query: 30  ANLWSSHPRSLRTRISVMPILLQQAWLNPQVRFEHMQTVLQR 155
           + +W      L   + V P+ LQ +W++  + + H    L R
Sbjct: 389 STMWVRDRFKLTQALVVDPLYLQHSWMDKSIDYRHWGIPLSR 430


>Z49068-3|CAA88862.1|  650|Caenorhabditis elegans Hypothetical
           protein K01C8.3a protein.
          Length = 650

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +3

Query: 30  ANLWSSHPRSLRTRISVMPILLQQAWLNPQVRFEHMQTVLQR 155
           + +W      L   + V P+ LQ +W++  + + H    L R
Sbjct: 389 STMWVRDRFKLTQALVVDPLYLQHSWMDKSIDYRHWGIPLSR 430


>U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H    CPE  + R P++C
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVC 185


>L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H    CPE  + R P++C
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVC 185


>AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line
           helicase protein 1 protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 95  EQDRHDRDPCPETARVRRPKIC 30
           +Q  H    CPE  + R P++C
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVC 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,902,712
Number of Sequences: 27780
Number of extensions: 82616
Number of successful extensions: 241
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)