Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J19
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    31   0.16 
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   3.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   3.4  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   4.5  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   4.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.8  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   7.8  

>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 149 TSDPDETVYLRREKGIERQYRLKCKKCALPIYYKHDQESNVAFIIDG 289
           TSD ++ VY++  K   ++Y         PI+Y H    N +F  +G
Sbjct: 185 TSDAEDLVYIQNSKATNKKYMATVS----PIFYTHFTSKNYSFFSEG 227


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 473 YANNARIIEKQLERKGMNKRQ 535
           Y + A+++ K LE+KG+NK +
Sbjct: 52  YRHEAQLLSKVLEKKGLNKEK 72


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 92  LRPFDSARVIDGSKHAHKITSDPDETVYLRREKGIERQYRLKCKK 226
           L+P D   + D S ++H     P++ VY+R    I+    L  K+
Sbjct: 325 LQPSDYHLLPDPSSNSHSFVISPNDIVYVRERNQIDHVKYLVSKE 369


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 318 PPSPGVWTNAPSIIKATLLS 259
           PP PG  TNAP  +K+  +S
Sbjct: 421 PPPPGFSTNAPKAVKSPEIS 440


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 485 HCLHSCQPLLWPQFH 441
           H  H C+ +LWP FH
Sbjct: 272 HYNHYCKNILWPTFH 286


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 47  GQMSLILDCTIDKLPLRPFDSARVIDGSKHAHKITSDPDETVYLRREK 190
           G +SL  D  ID +P+ P      I      + IT++ +ET YL +EK
Sbjct: 658 GLISLSSDLAID-IPISP-----AIISDIQFNSITTESEETTYLLKEK 699


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = -1

Query: 406 TELTHVFSMFCDHDLLRLCQSHLFIYISDPSLSRSLD*CSVNYKGYITLLIVFIIDRQSA 227
           TEL +++SM+   D+  L   H+ +          ++  + +YK  I++ + F  D++  
Sbjct: 201 TELAYLYSMYAAEDVKTLIHQHILVN-QRVYAEDVIEPKTFHYKNGISISMKFDKDQKKL 259

Query: 226 FFTFKPVLSFD 194
           F        +D
Sbjct: 260 FINDVSTTKYD 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,837
Number of Sequences: 5004
Number of extensions: 47456
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)