Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J19
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1211 - 11546407-11546466,11546550-11546618,11546777-115468...    57   1e-08
04_04_1382 - 33141860-33142153                                         28   6.0  

>07_01_1211 -
           11546407-11546466,11546550-11546618,11546777-11546865,
           11547046-11547142,11547238-11547391,11548295-11548409,
           11549182-11549250,11549996-11550110
          Length = 255

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = +2

Query: 68  DCTIDKLPLRPFDSARVIDGSKHAHKITSDPDETVYLRREKG-IERQYRLKCKKCALPIY 244
           D  + K+P R  D A V+D  KH  ++       V L+R +G +E+Q+R+ C  C L + 
Sbjct: 62  DTQLQKMPKRKTDRAHVLDKKKHLSRLNVKEAGKVLLKRGEGKLEKQFRMSCLGCGLFVC 121

Query: 245 YKHDQESNVA---FIIDGALVQTPGEGGVTDIYKQVALTQ 355
           Y+ ++E  +A   +++DGAL     E    D      +TQ
Sbjct: 122 YRSEEELELAPFIYVVDGALSSVAAETNPHDAPVPPCITQ 161


>04_04_1382 - 33141860-33142153
          Length = 97

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 506 VASL*FLHCLHSCQPLLWP-QFHLPL 432
           VA+  FLH  H   PLLWP    LPL
Sbjct: 9   VAARGFLHLFHLSAPLLWPLNLWLPL 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,807
Number of Sequences: 37544
Number of extensions: 283351
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)