Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J19
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-5|CAC70131.1|  244|Caenorhabditis elegans Hypothetical ...   139   1e-33
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    33   0.11 
Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical pr...    31   0.44 
CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    28   4.1  
U28943-10|AAA68362.1|  329|Caenorhabditis elegans Dehydrogenases...    27   7.2  
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    27   7.2  
AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AL161712-5|CAC70131.1|  244|Caenorhabditis elegans Hypothetical
           protein Y66D12A.8 protein.
          Length = 244

 Score =  139 bits (336), Expect = 1e-33
 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 3/180 (1%)
 Frame = +2

Query: 17  KPLHIYYCLCGQMSLILDCTIDKLPLRPFDSARVIDGSKHAHKITSDPDETVYLRREK-- 190
           KPL+ YYC CG+M++I D  I+++P R  D ARVI   +   K  + P ETVY++R    
Sbjct: 39  KPLYTYYCTCGEMAMISDTLINRMPKRERDGARVITPDRTTAKTFAKPGETVYVKRSPAV 98

Query: 191 GIERQYRLKCKKCALPIYYKHDQESNVAFIIDGALVQTPGEGGVTDIYKQVALTQPKKIM 370
           G+E+QYR  CKKC++P++Y+H    N  FI+  AL+     GG +   ++    + KK++
Sbjct: 99  GLEQQYRKMCKKCSIPLFYQHPSALNRTFILADALLSAQEVGGFSANNEE---QRAKKVI 155

Query: 371 VTKHTKNMGKFSSVTVST-XXXXXXXXXAREVADSYANNARIIEKQLERKGMNKRQAETP 547
           + ++ KN GK  SVTVST          ARE A+SY  NARI+   L+RKG+   +   P
Sbjct: 156 MKRNVKNQGKMGSVTVSTMEGEEEEEMEARETAESYTMNARIVHDALKRKGIGSGKFAVP 215


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 478 CIAVSHFSGLNFIFLFINSRHSHRTELTHVFSMFCDHDLLRLCQSHLFIYI 326
           C+ +     ++++FL I   HS+  ++  V+ +FC   +   C   +FIYI
Sbjct: 135 CVLIVDIDIMSYMFLSIEGVHSYSNDILLVYDVFCT-SISTFCYVSVFIYI 184


>Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical
           protein F57A8.3 protein.
          Length = 358

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 502 LLYDSCIVCIAVSHFSGLNFIFLFINSRHSH 410
           +LY  C   IA S F  LNFI+ +++S HSH
Sbjct: 98  ILYCGCF--IASSSFLSLNFIYRYVSSCHSH 126


>CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 420 DTVTELNLPMFLVCFVTMIFLGC 352
           D V  LN+ +F++CFV + F GC
Sbjct: 244 DDVWILNVILFIICFVALFFAGC 266


>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 281 IDGAL-VQTPGEGGVTDIYKQVALTQPKKIMVTKHTKNMGKF 403
           +DGAL V TP E  + D+ K+V+     K+ +    +NM +F
Sbjct: 197 LDGALIVSTPQEVSLLDVRKEVSFCVKTKVPILGVVENMARF 238


>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical
           protein K09A9.4 protein.
          Length = 716

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +2

Query: 338 QVALTQPKKIMVTKHTKNMGKFSSVTVSTXXXXXXXXXAREVADSYANNARIIEKQLERK 517
           QVA +QP  +M  KHT N G+  S++ +T          R  +D  +    +I K L+  
Sbjct: 534 QVAKSQPYILMYRKHTTN-GE-PSISQNTESPFNFFASRRLFSDRDSEAWDVIRKCLDED 591

Query: 518 GMNKRQAETPAHTLXKR 568
           G  K+ A +    + K+
Sbjct: 592 GKEKKVAGSSRKNIRKK 608


>Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical
           protein C05B5.3 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 363 FLGCVKATCLYISVTPPSPGVWTNAPSI 280
           + GC  + C+  ++ P S G W NA  I
Sbjct: 36  YAGCSSSGCVPATIVPKSSGFWPNADMI 63


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 19  TFTYLLLFVRPDVSHIRLYDRQITVKTLRQCKSHRWIETRSQNYFRP 159
           T T  + F++P + H+ + D     +T+RQ K  ++   ++QNY  P
Sbjct: 545 TVTGNVCFIQPSIFHVCVVDFG-NARTIRQDKPPKYALVQTQNYRAP 590


>U28943-10|AAA68362.1|  329|Caenorhabditis elegans Dehydrogenases,
           short chain protein7 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 305 PGEGGVTDIYKQVALTQPKKIMVTKHTKNMGKFSSVTV 418
           PG G  T I++   L     I+ T  TKN+ + +S TV
Sbjct: 229 PGNGVRTSIFRDSWLVSIASILSTPFTKNISQGASTTV 266


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 547 WSLSLTFIHTFPFQLLLYDSCIVCIAVSHFSGLNFIFLFINSRH 416
           W    +  +   F +L     + C+A+S+F+ L  IFL  + R+
Sbjct: 165 WGYDFSVPYAELFDMLEIFLTVPCLAISYFAYLTIIFLICSKRN 208


>AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical
           protein Y73B3A.16 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 19  TFTYLLLFVRPDVSHIRLYDRQITVKTLRQCKSHRWIETRSQNYFRP 159
           T T  + F++P   H+ + D     +T+RQ K  ++   ++QNY  P
Sbjct: 107 TVTGNVCFIQPSTFHVCVVDFG-NARTIRQDKPPKYALVQTQNYRAP 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,433
Number of Sequences: 27780
Number of extensions: 262176
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)