Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J14
         (812 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0EAL7 Cluster: Chromosome undetermined scaffold_86, wh...    34   4.9  
UniRef50_Q05FW6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  

>UniRef50_A0EAL7 Cluster: Chromosome undetermined scaffold_86, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_86,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 308

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 436 ICNKFYFGKYAKGIRKTCFLTKPMKGI----LYFKPMMMRYFSFTVVLFV 299
           I NKF F + AK I K CF+ K    +    L F+  ++ YF F ++  V
Sbjct: 194 ITNKFIFKEIAKSIWKICFVQKDQYVVIDAPLLFESKVLEYFCFPIITIV 243


>UniRef50_Q05FW6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 162

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
 Frame = -2

Query: 451 YLHNLICNKFYFGKYAKGIRKTCFLTKPMK-----GILYFKPMMMRYFSFTVVL---FVW 296
           +L   +CN F FGK +      CF  K         ++YFK   +++F+  + +   F +
Sbjct: 5   FLIKNLCNLFSFGKDSVFFFFKCFYKKKKNIFINYNLIYFKKYFLQFFNPEINIFKKFTF 64

Query: 295 NRYIKSKETRYVQKLTIVQRTFMGGIHNIL*KYN*ITMNKLLKNAK 158
           N  I  K    + K T V    M   H++L K   I  NKL+K  K
Sbjct: 65  NELIFRKIKISIVKNTFVYMHIMN--HHLLDKIETI-FNKLIKKKK 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,192,888
Number of Sequences: 1657284
Number of extensions: 11625012
Number of successful extensions: 21103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21095
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)