Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J14
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   3.2  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    27   3.2  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   5.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.5  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   9.7  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 91  LFERSEKKQTE--AIVTFCAFWRNERRKK 11
           LFE+  +K TE   +  FCAF R++ +KK
Sbjct: 456 LFEKDWEKYTEEGTLKLFCAFSRDQEKKK 484


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 487 IHLYNTNIDVFEQIQRHLLIYYVMFKL 567
           +HL++T + + E+I RHL  Y +  ++
Sbjct: 562 LHLHSTPLHILEEIIRHLSAYAISIRM 588


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 292 RYIKSKETRYVQKLTIVQRTFMGGIHNIL*KYN*ITMNKLLKNAKTTAQKXQD 134
           RY    +T+ ++K  + +   MGGIH++   +      +L KN +T     QD
Sbjct: 198 RYSNKYDTKVLRKAILEKSLRMGGIHDLEQSHE----MQLAKNGRTLVHAFQD 246


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 442  NLICNKFYFGKYAKGIRKTCFLTKPMKGIL 353
            N++C+ FY G  ++ + K  F+T    GI+
Sbjct: 2433 NILCSCFYTGANSEWLHKNLFITGHPDGII 2462


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 8   FFFSSLISPKRTKGHNRLSLLLLTP 82
           FFFS LISP+R      L  + L P
Sbjct: 80  FFFSGLISPERPSADADLGAINLKP 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,828
Number of Sequences: 5004
Number of extensions: 55964
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)