Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J14
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0006 + 11426346-11426420,11426733-11427452                       30   2.5  
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    29   3.3  

>09_03_0006 + 11426346-11426420,11426733-11427452
          Length = 264

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 88  FERSEKKQTEAIVTFCAFWRNERRKKKRT 2
           F R  +++  A+   CA WR+  RK++RT
Sbjct: 58  FSRRRRRRPPALRRCCAAWRHRTRKRRRT 86


>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 315 VKLKYRIIIGLKYRIPFIGFVRKHVFLIPLAYL 413
           +K K   + G  YRIP +G V+K +  +PL +L
Sbjct: 261 LKSKVHELAGDDYRIPVLGCVKKWIQAVPLKFL 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,807
Number of Sequences: 37544
Number of extensions: 272019
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)