Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J14
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10414-5|AAU05572.1|  156|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U10414-5|AAU05572.1|  156|Caenorhabditis elegans Hypothetical
           protein F42A10.9 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 291 RFHTNKTTVKLKYRIIIGLKYRIPFI 368
           RF ++ TTV+ K+ +++G KY IPF+
Sbjct: 31  RFISSGTTVE-KFPLVVGTKYNIPFL 55


>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +3

Query: 153 VVLAFFNSLFIVI*LY---FYSILCM--PPINVRCTIVNFCTYLVSLDFI*RFHTNKTT- 314
           + L  F++++I + +Y   F  IL +   P  V+  IV       S  ++  F +  +T 
Sbjct: 78  IALCTFSTVYIFLPMYGMFFVGILSLFSVPNTVQFLIVYLMGTFTSASYVYLFESRSSTL 137

Query: 315 VKLKYRIIIGLKYRIPFIGFVRKHVFLI 398
           V+ K+RII G    I +  F+   +FLI
Sbjct: 138 VQNKFRIIRGRTRMIYYSLFLFPFIFLI 165


>Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical
           protein K03D7.8 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 406 AKGIRKTCFLTKPMKGILYFKPMMMRYFSFTVVLFVWNRYIKSKET 269
           A G+RK     +P  G    +  +   F FT+ L +   Y K+K+T
Sbjct: 222 ASGVRKNRTSVRPASGFSDVRKFVFFCFLFTISLNLTEMYTKNKKT 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,175
Number of Sequences: 27780
Number of extensions: 304083
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)