Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J13
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.04c |||mitochondrial copper ion transport protein|Schiz...    70   2e-13
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    25   6.4  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    25   6.4  

>SPCC1672.04c |||mitochondrial copper ion transport
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 30/63 (47%), Positives = 39/63 (61%)
 Frame = +2

Query: 161 PPDKGSFPLDHEGICKKTMVRYMKCLIXXXXXXXLCRDEAKEYLACRMENNLMAKEDWNN 340
           PP++GSFPLDH G C   M +Y++C+         CR  AK+YL CRM+  L  K+D  N
Sbjct: 6   PPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQCRMDTGLFGKDDMKN 65

Query: 341 LGF 349
           LGF
Sbjct: 66  LGF 68


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 137 GQKQFIPTPPDKGSFPLDHEGICKKTMV 220
           G K+F     D G+F    EG+ KKT +
Sbjct: 51  GNKKFRALRLDSGNFSWGSEGVSKKTRI 78


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 137 GQKQFIPTPPDKGSFPLDHEGICKKTMV 220
           G K+F     D G+F    EG+ KKT +
Sbjct: 51  GNKKFRALRLDSGNFSWGSEGVSKKTRI 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,340
Number of Sequences: 5004
Number of extensions: 33728
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)