Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J13
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-3|CAC42299.1|   85|Caenorhabditis elegans Hypothetical pr...    78   3e-15
AC006670-5|AAF39912.2|  356|Caenorhabditis elegans Hypothetical ...    30   0.82 
AC006670-4|AAU20843.1|  518|Caenorhabditis elegans Hypothetical ...    30   0.82 
Z77135-2|CAB00879.1|  769|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z78420-3|CAC42299.1|   85|Caenorhabditis elegans Hypothetical
           protein F45H11.5 protein.
          Length = 85

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 34/67 (50%), Positives = 41/67 (61%)
 Frame = +2

Query: 164 PDKGSFPLDHEGICKKTMVRYMKCLIXXXXXXXLCRDEAKEYLACRMENNLMAKEDWNNL 343
           P KGSFPLDHEG CK  M+ YM CL         CR  AK+Y  CRM + LM KE+W  L
Sbjct: 16  PLKGSFPLDHEGTCKLEMLNYMVCLHEKKQQNSECRSTAKDYFECRMNHGLMDKEEWQKL 75

Query: 344 GFQENKE 364
           G+ + K+
Sbjct: 76  GYGDAKQ 82


>AC006670-5|AAF39912.2|  356|Caenorhabditis elegans Hypothetical
           protein K07A3.3a protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +2

Query: 131 TFGQKQFIPTPPDKGSFPLDHEG-ICKKTMVRYMKCLIXXXXXXXLCRDEAKEYLAC--- 298
           TF Q      PP  G  P+  +G   +K ++ + K ++       + ++EAK+YLA    
Sbjct: 69  TFLQNAIAHQPPS-GLTPVGRDGGRDEKKLILHPKEIVEHLNKYVVGQEEAKKYLAVAVY 127

Query: 299 ----RMENNLMAKEDW 334
               R+ENNL   E W
Sbjct: 128 QHYRRVENNLRVTEQW 143


>AC006670-4|AAU20843.1|  518|Caenorhabditis elegans Hypothetical
           protein K07A3.3b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +2

Query: 131 TFGQKQFIPTPPDKGSFPLDHEG-ICKKTMVRYMKCLIXXXXXXXLCRDEAKEYLAC--- 298
           TF Q      PP  G  P+  +G   +K ++ + K ++       + ++EAK+YLA    
Sbjct: 69  TFLQNAIAHQPPS-GLTPVGRDGGRDEKKLILHPKEIVEHLNKYVVGQEEAKKYLAVAVY 127

Query: 299 ----RMENNLMAKEDW 334
               R+ENNL   E W
Sbjct: 128 QHYRRVENNLRVTEQW 143


>Z77135-2|CAB00879.1|  769|Caenorhabditis elegans Hypothetical
           protein T16A9.4 protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 144 NNLFQLHQIREVFPWITKEFARKLWFAT*NV*LITIAITHYVVMK 278
           NN F+L Q++ VFP+I  E   K  F      L+ ++  H V+++
Sbjct: 322 NNRFELWQLKSVFPFINFEKYLKTVFKE----LVALSPNHTVIVR 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,896,549
Number of Sequences: 27780
Number of extensions: 182795
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)