Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_J11
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ... 62 9e-11
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 51 2e-07
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 47 3e-06
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 31 0.25
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.3
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 4.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 4.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.2
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 7.2
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 9.5
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 25 9.5
>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 80
Score = 62.1 bits (144), Expect = 9e-11
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQ-KTLT 300
GCG F V+IVS F+GK LARHRLVN LQE +K IHAFTQ +TL+
Sbjct: 28 GCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFTQVRTLS 75
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLTVD 306
GCG+ + V I S F+GK LA+HRLVN++L+EE++ +H T D
Sbjct: 57 GCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNLSTEVED 105
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 473 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVN 586
VS+PGK IL GEH+VVYG TA+A ++ LRS ++ N
Sbjct: 7 VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTN 44
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 175 FSVLIVSDKFKGKPLLARHRLVNTLLQEE 261
F + IVS +F G +ARHRLV LL++E
Sbjct: 54 FRLEIVSPEFSGMSRVARHRLVYGLLKDE 82
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 678 ILNWHQGITGKFSWR-LPHKIDHDYHLRRVEEYLHLI 785
++NWH + SWR + K D +L V Y HLI
Sbjct: 453 LMNWHYKLPDTISWRTIDLKKDRIPNLCAVSLYYHLI 489
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 662 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 564
L P+ DPR + L EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 235 LVNTLLQEELKTIHAFTQKTLTVDQWKTQ*CILFNTMQ*SKSISFLLFIIPCLRSSQFRV 414
LV +L++ELK + + + TQ L ++ + + F++F++P + Q
Sbjct: 287 LVKQILEKELKELPVACYSIINLHDSLTQFPNLDFILKTTALVLFIIFLVPSFKKLQNEE 346
Query: 415 CLLH 426
+LH
Sbjct: 347 SILH 350
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 627 WIYRRPFHWSRQSKVCSI-LNWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIXPNFD 800
W RR Q + +I ++W G G F+ PHKID + ++ ++I NF+
Sbjct: 1455 WKERRHLDQCLQQLLENIEISWLGGFKGIFN---PHKIDTSLFAKFSSQFQNIIAKNFN 1510
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 726 PHKIDHDYHLRRVEEYLH 779
P IDHD H++R+ E L+
Sbjct: 22 PDPIDHDLHVQRLRELLY 39
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 699 SPGASLGWNRLLTVGSNGMVS 637
SP SLG R LTVG+N S
Sbjct: 515 SPTGSLGMRRSLTVGANASCS 535
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 645 FHWSRQSKVCSILNWHQGIT--GKFSWRLPHKIDHDYHLRRVEEYLHLIXPNFD 800
FHW+ C+ L + GKF + L +D+ + +E + PNFD
Sbjct: 37 FHWA-----CTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFD 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,999
Number of Sequences: 5004
Number of extensions: 69187
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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