Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_J11
(802 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF060511-1|AAG43129.1| 86|Homo sapiens My016 protein protein. 76 2e-13
AB209722-1|BAD92959.1| 421|Homo sapiens mevalonate kinase varia... 55 3e-07
M88468-1|AAB59362.1| 396|Homo sapiens mevalonate kinase protein. 54 5e-07
BC016140-1|AAH16140.1| 396|Homo sapiens MVK protein protein. 54 5e-07
AF217536-1|AAF82406.1| 113|Homo sapiens truncated mevalonate ki... 54 5e-07
AF217535-1|AAF82407.1| 396|Homo sapiens mevalonate kinase protein. 54 5e-07
DQ225187-1|ABB04094.1| 107|Homo sapiens bolA-like 3 protein. 44 8e-04
AC073263-3|AAX93059.1| 107|Homo sapiens unknown protein. 44 8e-04
BC063405-1|AAH63405.1| 137|Homo sapiens bolA homolog 1 (E. coli... 41 0.005
AL591493-19|CAI12571.1| 137|Homo sapiens bolA homolog 1 (E. col... 41 0.005
AF151901-1|AAD34138.1| 137|Homo sapiens CGI-143 protein protein. 41 0.005
BC130403-1|AAI30404.1| 124|Homo sapiens bolA homolog 2 (E. coli... 39 0.024
BC130401-1|AAI30402.1| 124|Homo sapiens bolA homolog 2 (E. coli... 39 0.024
BC062756-1|AAH62756.1| 58|Homo sapiens BOLA2 protein protein. 39 0.024
Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein. 31 6.4
AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium ch... 30 8.5
AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium ch... 30 8.5
AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium ch... 30 8.5
>AF060511-1|AAG43129.1| 86|Homo sapiens My016 protein protein.
Length = 86
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/50 (70%), Positives = 37/50 (74%)
Frame = +1
Query: 163 CGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLTVDQW 312
C F VL+VS KF+GKPLL RHRLVN L EEL IHAF QKTLT DQW
Sbjct: 31 CSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELPHIHAFEQKTLTPDQW 80
>AB209722-1|BAD92959.1| 421|Homo sapiens mevalonate kinase variant
protein.
Length = 421
Score = 55.2 bits (127), Expect = 3e-07
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +2
Query: 473 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 637
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V ++LP + ++
Sbjct: 33 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLNLPNIGIK 84
>M88468-1|AAB59362.1| 396|Homo sapiens mevalonate kinase protein.
Length = 396
Score = 54.4 bits (125), Expect = 5e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +2
Query: 473 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 637
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 8 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59
>BC016140-1|AAH16140.1| 396|Homo sapiens MVK protein protein.
Length = 396
Score = 54.4 bits (125), Expect = 5e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +2
Query: 473 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 637
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 8 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59
>AF217536-1|AAF82406.1| 113|Homo sapiens truncated mevalonate
kinase protein.
Length = 113
Score = 54.4 bits (125), Expect = 5e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +2
Query: 473 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 637
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 4 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 55
>AF217535-1|AAF82407.1| 396|Homo sapiens mevalonate kinase protein.
Length = 396
Score = 54.4 bits (125), Expect = 5e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +2
Query: 473 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 637
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 8 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59
>DQ225187-1|ABB04094.1| 107|Homo sapiens bolA-like 3 protein.
Length = 107
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIH 276
GCGA + + I S++FK K + +H++VN L+EE+K +H
Sbjct: 58 GCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKEMH 96
>AC073263-3|AAX93059.1| 107|Homo sapiens unknown protein.
Length = 107
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIH 276
GCGA + + I S++FK K + +H++VN L+EE+K +H
Sbjct: 58 GCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKEMH 96
>BC063405-1|AAH63405.1| 137|Homo sapiens bolA homolog 1 (E. coli)
protein.
Length = 137
Score = 41.1 bits (92), Expect = 0.005
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEEL-KTIHAFTQKTLTVDQWK 315
G F V +VS +F+G L RHRLV+ L EEL +HA + T QW+
Sbjct: 63 GSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQWR 115
>AL591493-19|CAI12571.1| 137|Homo sapiens bolA homolog 1 (E. coli)
protein.
Length = 137
Score = 41.1 bits (92), Expect = 0.005
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEEL-KTIHAFTQKTLTVDQWK 315
G F V +VS +F+G L RHRLV+ L EEL +HA + T QW+
Sbjct: 63 GSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQWR 115
>AF151901-1|AAD34138.1| 137|Homo sapiens CGI-143 protein protein.
Length = 137
Score = 41.1 bits (92), Expect = 0.005
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEEL-KTIHAFTQKTLTVDQWK 315
G F V +VS +F+G L RHRLV+ L EEL +HA + T QW+
Sbjct: 63 GSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQWR 115
>BC130403-1|AAI30404.1| 124|Homo sapiens bolA homolog 2 (E. coli)
protein.
Length = 124
Score = 38.7 bits (86), Expect = 0.024
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 163 CGAKFSVLIVSDKFKGKPLLARHR 234
C F VL+VS KF+GKPLL RHR
Sbjct: 97 CSCSFRVLVVSAKFEGKPLLQRHR 120
>BC130401-1|AAI30402.1| 124|Homo sapiens bolA homolog 2 (E. coli)
protein.
Length = 124
Score = 38.7 bits (86), Expect = 0.024
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 163 CGAKFSVLIVSDKFKGKPLLARHR 234
C F VL+VS KF+GKPLL RHR
Sbjct: 97 CSCSFRVLVVSAKFEGKPLLQRHR 120
>BC062756-1|AAH62756.1| 58|Homo sapiens BOLA2 protein protein.
Length = 58
Score = 38.7 bits (86), Expect = 0.024
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 163 CGAKFSVLIVSDKFKGKPLLARHR 234
C F VL+VS KF+GKPLL RHR
Sbjct: 31 CSCSFRVLVVSAKFEGKPLLQRHR 54
>Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein.
Length = 279
Score = 30.7 bits (66), Expect = 6.4
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +1
Query: 547 PRPKELHSDKGSKHSTRTSSPHTFAVRGSTGDHSIGADSQKSVPS*TGTRG*PANSLGDY 726
PRP S S ++ TS+P T ST + GA + S T T P
Sbjct: 56 PRPVPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTPSPVPTTSTTSAPTTRTTSA 115
Query: 727 PTKSTMTIT 753
P ST + T
Sbjct: 116 PISSTTSAT 124
>AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium channel
protein.
Length = 1791
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/72 (25%), Positives = 26/72 (36%)
Frame = -2
Query: 771 IPPPFASDSHGRFCGVISKRICRLSPGASLGWNRLLTVGSNGMVSCRSTHGKCMWTAGSC 592
+ P D F S +C S GW+ LL+ SC S+ C +
Sbjct: 1522 VNPESGIDDIFNFKTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGIAT 1581
Query: 591 GVFTSFITMELL 556
F S+I + L
Sbjct: 1582 SYFVSYIIISFL 1593
>AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium channel
type XI alpha subunit protein.
Length = 1791
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/72 (25%), Positives = 26/72 (36%)
Frame = -2
Query: 771 IPPPFASDSHGRFCGVISKRICRLSPGASLGWNRLLTVGSNGMVSCRSTHGKCMWTAGSC 592
+ P D F S +C S GW+ LL+ SC S+ C +
Sbjct: 1522 VNPESGIDDIFNFKTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGIAT 1581
Query: 591 GVFTSFITMELL 556
F S+I + L
Sbjct: 1582 SYFVSYIIISFL 1593
>AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium channel
alpha subunit SCN12A protein.
Length = 1791
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/72 (25%), Positives = 26/72 (36%)
Frame = -2
Query: 771 IPPPFASDSHGRFCGVISKRICRLSPGASLGWNRLLTVGSNGMVSCRSTHGKCMWTAGSC 592
+ P D F S +C S GW+ LL+ SC S+ C +
Sbjct: 1522 VNPESGIDDIFNFKTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGIAT 1581
Query: 591 GVFTSFITMELL 556
F S+I + L
Sbjct: 1582 SYFVSYIIISFL 1593
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,918,803
Number of Sequences: 237096
Number of extensions: 2742257
Number of successful extensions: 6061
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6061
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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