Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_J10
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 70 2e-13
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 68 1e-12
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 62 4e-11
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.3
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 1.7
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 1.7
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 1.7
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 1.7
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 5.1
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 8.9
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 69.7 bits (163), Expect = 2e-13
Identities = 41/111 (36%), Positives = 55/111 (49%)
Frame = +2
Query: 68 VSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLIT 247
+S +E A SALIL D + +T + ++ KAA VDV P W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 248 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
NIGSG SD+DMGFGLFD
Sbjct: 61 NIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/111 (36%), Positives = 54/111 (48%)
Frame = +2
Query: 68 VSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLIT 247
+S +E A SALIL D + +T + ++ KAA VDV P W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 248 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 62.5 bits (145), Expect = 4e-11
Identities = 37/111 (33%), Positives = 53/111 (47%)
Frame = +2
Query: 68 VSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLIT 247
+S +E A +ALIL D + +T + ++ KA V+V P W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 248 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +1
Query: 28 LRPPATCTFKTXNGVKS*IXMCXLCSHPGGXXCCRNWXXNFHHLE---SGGCRC 180
L P +CTF + + +C LC H C + W N + S GC C
Sbjct: 1259 LVPRMSCTFCCLS-IHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSCSSGCGC 1311
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = +1
Query: 91 CXLCSHPGGXXCCRNWXXNFH 153
C C PG CC +FH
Sbjct: 266 CSACHGPGNFLCCETCPNSFH 286
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 239 GHGH*CLPRLWRTDL 195
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,886
Number of Sequences: 5004
Number of extensions: 19744
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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