Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_J10
(517 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 88 1e-17
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 88 1e-17
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 88 1e-17
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 88 1e-17
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 88 2e-17
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 86 8e-17
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 81 2e-15
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 88.2 bits (209), Expect = 1e-17
Identities = 47/114 (41%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E AC+ SALIL D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
N+G+G SDDDMGFGLFD
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 88.2 bits (209), Expect = 1e-17
Identities = 47/114 (41%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E AC+ SALIL D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
N+G+G SDDDMGFGLFD
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 88.2 bits (209), Expect = 1e-17
Identities = 47/114 (41%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E AC+ SALIL D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
N+G+G SDDDMGFGLFD
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 88.2 bits (209), Expect = 1e-17
Identities = 47/114 (41%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E AC+ SALIL D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
N+G+G SDDDMGFGLFD
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 87.8 bits (208), Expect = 2e-17
Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E AC+ SAL+L D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
N+G+G SDDDMGFGLFD
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 85.8 bits (203), Expect = 8e-17
Identities = 46/113 (40%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E AC+ SALIL D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 397
N+G+G SDDDMGFGLF
Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 81.4 bits (192), Expect = 2e-15
Identities = 45/114 (39%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 65 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGINVRDLI 244
M S +E A + SALIL D V VT I+ ++KAA V+V P+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 245 TNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 400
++G+G SDDDMGFGLFD
Sbjct: 61 CDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,676,934
Number of Sequences: 237096
Number of extensions: 829266
Number of successful extensions: 1184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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