Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J08
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 693 INNTIMFQLVFLQMNFEDWT 634
           I N +  QL+   M F+DWT
Sbjct: 67  IANNVTMQLLPKLMEFDDWT 86


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 639 WTITSRYK*KLKSCLITEGILQRLTANIINKAKNY 535
           WTITS ++  LK  L+     +   A  +   KN+
Sbjct: 72  WTITSYHRINLKCSLVEFSENKNCNAGSLTVKKNF 106


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 275 PRETTKKSVDKSRRHNINRPTRLSRCES 358
           PR T  K    +R  +  RP+R + CES
Sbjct: 385 PRSTHLKVSGINRVGSTRRPSRRNSCES 412


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 635 VQSSKFICKKTS*NIIVLLICSICSHF--LKYIYSE 736
           +QS K + K  S  +I+  IC    H   L Y+Y++
Sbjct: 262 IQSRKSVIKMLSAVVILFFICWAPFHTQRLLYVYAQ 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,448
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)